9JSA | pdb_00009jsa

CatPSAM-H8

PDB DOI: https://doi.org/10.2210/pdb9JSA/pdb

Classification: PROTEIN BINDING
Organism(s): Borreliella burgdorferi
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-09-30 Released: 2025-10-01
Deposition Author(s): Makabe, K.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.288 (Depositor), 0.289 (DCC)
R-Value Work:
0.263 (Depositor), 0.264 (DCC)
R-Value Observed:
0.265 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

CatPSAM-H8

Makabe, K.

To be published.

Macromolecule Content

Total Structure Weight: 68.94 kDa
Atom Count: 5,010
Modeled Residue Count: 630
Deposited Residue Count: 640
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer Surface Protein A	A, B	320	Borreliella burgdorferi	Mutation(s): 0
UniProt
Find proteins for D0VWU8 (Borreliella burgdorferi) Explore D0VWU8 Go to UniProtKB: D0VWU8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D0VWU8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.288 (Depositor), 0.289 (DCC)
R-Value Work: 0.263 (Depositor), 0.264 (DCC)
R-Value Observed: 0.265 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.205	α = 90
b = 79.45	β = 90
c = 227.26	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XDS	data scaling
MOLREP	phasing
PHENIX	refinement
Coot	model building

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-10-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	22H01873

Revision History (Full details and data files)

Version 1.0: 2025-10-01
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.