9JOM | pdb_00009jom

STRUCTURE OF ENDO-1,3-FUCANASE FUN168E FROM GH168 FAMILY

• PDB DOI: https://doi.org/10.2210/pdb9JOM/pdb

• Classification: HYDROLASE
• Organism(s): Wenyingzhuangia fucanilytica
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-09-25 Released: 2024-11-27 
• Deposition Author(s): Chen, G.N., Chang, Y.G.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.04 Å
• R-Value Free: 
  0.234 (Depositor), 0.232 (DCC) 
• R-Value Work: 
  0.177 (Depositor), 0.176 (DCC) 
• R-Value Observed: 
  0.181 (Depositor) 

Starting Model: in silico

Literature

Structure of endo-1.3-fucanase (Fun168E) at 2.04 Angstroms resulution.

Chen, G.N., Chang, Y.G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 45.57 kDa 
• Atom Count: 3,286 
• Modeled Residue Count: 354 
• Deposited Residue Count: 394 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycoside-hydrolase family GH114 TIM-barrel domain-containing protein	A	394	Wenyingzhuangia fucanilytica	Mutation(s): 0  Gene Names: AXE80_08855
UniProt
Find proteins for A0A1B1Y6K9 (Wenyingzhuangia fucanilytica) Explore A0A1B1Y6K9  Go to UniProtKB:  A0A1B1Y6K9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.04 Å
• R-Value Free:  0.234 (Depositor), 0.232 (DCC) 
• R-Value Work:  0.177 (Depositor), 0.176 (DCC) 
• R-Value Observed: 0.181 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.135	α = 90
b = 83.135	β = 90
c = 100.43	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-27 
Deposition Author(s): Chen, G.N., Chang, Y.G.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	U22A20542

Revision History  

• Version 1.0: 2024-11-27
  Type: Initial release