9JMB | pdb_00009jmb

Cryo-EM structure of HSV-2 gB and FAB 16F9 complex

• PDB DOI: https://doi.org/10.2210/pdb9JMB/pdb
• EM Map EMD-61596: EMDB EMDataResource

• Classification: VIRAL PROTEIN/IMMUNE SYSTEM
• Organism(s): Human alphaherpesvirus 2, Mus musculus
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2024-09-20 Released: 2025-09-24 
• Deposition Author(s): Li, Y., Zheng, Q., Li, S.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.18 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure of HSV-2 gB and FAB 16F9 complex

Li, Y., Zheng, Q., Li, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer - A2B1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 159.53 kDa 
• Atom Count: 6,512 
• Modeled Residue Count: 814 
• Deposited Residue Count: 1,436 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycoprotein B	A	727	Human alphaherpesvirus 2	Mutation(s): 0  Gene Names: UL27
UniProt
Find proteins for Q89920 (Human herpesvirus 2) Explore Q89920  Go to UniProtKB:  Q89920

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
16F9 VH	B [auth H]	477	Mus musculus	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
16F9 VL	C [auth L]	232	Mus musculus	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.18 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-09-24 
Deposition Author(s): Li, Y., Zheng, Q., Li, S.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2025-09-24
  Type: Initial release