9JGI | pdb_00009jgi

Architecture of a pentameric assembly of the tube tail protein

PDB DOI: https://doi.org/10.2210/pdb9JGI/pdb
EM Map EMD-61465: EMDB EMDataResource

Classification: ANTIVIRAL PROTEIN
Organism(s): Bacillus subtilis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-09-07 Released: 2025-07-16
Deposition Author(s): Lin, W., Yuhang, H., Hongtao, Z.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Pentameric Assembly Architecture of the Tail Tube Protein in SPR Phages

Wang, L., He, Y., Zhu, K., Cui, S., Gao, X., Shang, K., Zhu, H.

(2024) Chin Phys Lett 41: 128701

DOI: https://doi.org/10.1088/0256-307X/41/12/128701

Macromolecule Content

Total Structure Weight: 452 kDa
Atom Count: 27,798
Modeled Residue Count: 3,513
Deposited Residue Count: 4,050
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
tail tube protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	270	Bacillus subtilis	Mutation(s): 0 Gene Names: B4122_1986, J5227_09585
UniProt
Find proteins for A0A6M3ZC28 (Bacillus subtilis (strain 168)) Explore A0A6M3ZC28 Go to UniProtKB: A0A6M3ZC28
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A6M3ZC28
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-07-16

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	--

Revision History (Full details and data files)

Version 1.0: 2025-07-16
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.