9JG8 | pdb_00009jg8

Structure of cargo complex (BtpeA-BtaeB-BtapC) bound to the VgrG spike from the Type VI secretion system


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A conserved adaptor orchestrates co-secretion of synergistic type VI effectors in gut Bacteroidota.

Li, W.Zheng, S.Xu, X.He, J.Jiao, X.Wang, M.Hu, W.Li, S.Jiang, X.Lim, B.Shao, F.Gao, X.

(2025) Cell Host Microbe 33: 1901

  • DOI: https://doi.org/10.1016/j.chom.2025.09.012
  • Primary Citation of Related Structures:  
    9JDH, 9JDI, 9JG8

  • PubMed Abstract: 

    Interbacterial competition is crucial for shaping microbial communities and is often mediated by type VI secretion systems (T6SSs) that inject effectors into competing bacteria. T6SS effectors are released via structural proteins such as VgrG, but the secretion timing and coordination are unclear. Here, we report two effectors, BtpeA (Bacteroides T6SS phosphatase effector A) and BtaeB (Bacteroides T6SS amidase effector B), within the Bacteroidota T6SS that exert distinct cell-wall destructive activities critical for interspecies competition but whose secretion is interdependent. BtpeA and BtaeB co-secretion requires an adaptor protein, BtapC (Bacteroides T6SS adaptor protein C), that mediates the sequential assembly of the pre-firing complex, VgrG-BtpeA-BtaeB-BtapC. Structural analyses of this quaternary complex elucidate multi-cargo loading mechanisms with a conserved loop in BtaeB serving as a "checkpoint" to ensure BtpeA co-secretion. During mouse colonization, the combined activities of BtpeA and BtaeB significantly exceed the sum of the individual effectors. These findings unveil a T6SS-mediated co-delivery mechanism that ensures functional synergism of effectors, highlighting potential applications in modulating gut microbiota.


  • Organizational Affiliation
    • State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DUF3289 family proteinA [auth B]608Bacteroides fragilisMutation(s): 0 
Gene Names: FSA06_12460
UniProt
Find proteins for A0A5C6JKA9 (Bacteroides fragilis)
Explore A0A5C6JKA9 
Go to UniProtKB:  A0A5C6JKA9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5C6JKA9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Peptidase C39-like domain-containing proteinB [auth C]617Bacteroides fragilisMutation(s): 0 
Gene Names: FSA06_12440
UniProt
Find proteins for A0AB38PQQ6 (Bacteroides fragilis)
Explore A0AB38PQQ6 
Go to UniProtKB:  A0AB38PQQ6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AB38PQQ6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Bacteroides T6SS Adapter Protein CC [auth A]254Bacteroides fragilisMutation(s): 0 
Gene Names: FSA06_12465
UniProt
Find proteins for A0A5C6HF83 (Bacteroides fragilis)
Explore A0A5C6HF83 
Go to UniProtKB:  A0A5C6HF83
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5C6HF83
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Type VI secretion system spike protein VgrGD [auth G],
E,
F
618Bacteroides fragilisMutation(s): 0 
Gene Names: FSA06_12470
UniProt
Find proteins for A0A5C6HF51 (Bacteroides fragilis)
Explore A0A5C6HF51 
Go to UniProtKB:  A0A5C6HF51
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5C6HF51
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China323B2003

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-10
    Type: Initial release
  • Version 1.1: 2025-10-22
    Changes: Data collection, Database references
  • Version 1.2: 2025-11-26
    Changes: Data collection, Database references