9JDV | pdb_00009jdv

Human URAT1 bound with Uric acid


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.2 of the entry. See complete history


Literature

Molecular mechanisms of urate transport by the native human URAT1 and its inhibition by anti-gout drugs.

Wu, C.Zhang, C.Jin, S.Wang, J.J.Dai, A.Xu, J.Zhang, H.Yang, X.He, X.Yuan, Q.Hu, W.Xu, Y.Wang, M.Jiang, Y.Yang, D.Xu, H.E.

(2025) Cell Discov 11: 33-33

  • DOI: https://doi.org/10.1038/s41421-025-00779-z
  • Primary Citation of Related Structures:  
    9JDV, 9JDY, 9JDZ, 9JE0, 9JE1

  • PubMed Abstract: 

    Gout, a common and painful disease, stems from hyperuricemia, where elevated blood urate levels lead to urate crystal formation in joints and kidneys. The human urate transporter 1 (hURAT1) plays a critical role in urate homeostasis by facilitating urate reabsorption in the renal proximal tubule, making it a key target for gout therapy. Pharmacological inhibition of hURAT1 with drugs such as dotinurad, benzbromarone, lesinurad, and verinurad promotes urate excretion and alleviates gout symptoms. Here, we present cryo-electron microscopy structures of native hURAT1 bound with these anti-gout drugs in the inward-open state, and with urate in inward-open, outward-open, and occluded states. Complemented by mutagenesis and cell-based assays, these structures reveal the mechanisms of urate reabsorption and hURAT1 inhibition. Our findings elucidate the molecular basis of urate transport and anti-gout medication action and provide a structural framework for the rational design of next-generation therapies for hyperuricemia and gout.


  • Organizational Affiliation

    Research Center for Medicinal Structural Biology, National Research Center for Translational Medicine at Shanghai, State Key Laboratory of Medical Genomics, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. wcr13215@rjh.com.cn.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier family 22 member 12553Homo sapiensMutation(s): 0 
Gene Names: SLC22A12OATL4URAT1UNQ6453/PRO34004
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q96S37 (Homo sapiens)
Explore Q96S37 
Go to UniProtKB:  Q96S37
PHAROS:  Q96S37
GTEx:  ENSG00000197891 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96S37
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32130022
National Natural Science Foundation of China (NSFC)China32301016

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-16
    Type: Initial release
  • Version 2.0: 2024-10-23
    Type: Coordinate replacement
    Reason: Model completeness
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Refinement description, Structure summary
  • Version 2.1: 2024-10-30
    Changes: Data collection
  • Version 2.2: 2025-04-16
    Changes: Data collection, Database references