9J1L

Side fiber of monocin

• PDB DOI: https://doi.org/10.2210/pdb9J1L/pdb
• EM Map EMD-61075: EMDB EMDataResource

• Classification: VIRUS LIKE PARTICLE
• Organism(s): Listeria monocytogenes
• Expression System: Lactococcus lactis
• Mutation(s): No 


• Deposited: 2024-08-05 Released: 2025-01-08 
• Deposition Author(s): Wang, J.W., Gu, Z.W.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.28 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of an F-type phage tail-like bacteriocin from Listeria monocytogenes

Wang, J.W., Gu, Z.W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 15-mer - A9B3C3 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 15-mer - A9B2C1D1E1F1 

Local Symmetry: Cyclic - C3  (Explore in 3D)
Local Stoichiometry: Homo 3-mer - A3 Local Symmetry: Cyclic - C3  (Explore in 3D)
Local Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 293.42 kDa 
• Atom Count: 20,288 
• Modelled Residue Count: 2,598 
• Deposited Residue Count: 2,639 
• Unique protein chains: 4

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-amylase	A [auth 1], H [auth N], M [auth n]	191	Listeria monocytogenes	Mutation(s): 0  Gene Names:  AF817_12260, AP104_04205, B4X68_12585, DG57_02060, EYJ21_12320, F1788_11040, FJL03_10560, GCV64_11985, GT011_12435, GYO01_10525, GYP27_04165, GYU24_12610, GZK27_10240
UniProt
Find proteins for A0A3D7WJE9 (Listeria monocytogenes) Explore A0A3D7WJE9  Go to UniProtKB:  A0A3D7WJE9

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
FtbP	B [auth 2], D [auth A], E [auth B], F [auth C], G [auth I], J [auth P], K [auth Q], L [auth R], O [auth p]	178	Listeria monocytogenes	Mutation(s): 0  Gene Names:  AF817_12270, AP104_04215, B4X68_12595, DG57_02070, EYJ21_12310, EZM42_13160, F1788_11050, FJL03_10570, FPL45_04495, GHO09_06960, GT011_12445, GYO01_10535, GYP27_04175, GYU24_12620, GZK27_10250
UniProt
Find proteins for A0A3R0H0Z2 (Listeria monocytogenes) Explore A0A3R0H0Z2  Go to UniProtKB:  A0A3R0H0Z2

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
FtbO	C [auth 3], N [auth o]	159	Listeria monocytogenes	Mutation(s): 0  Gene Names:  AP104_04210, B4X68_12590, EYJ21_12315, EZM42_13155, F1788_11045, FJL03_10565, FPL45_04490, GCV64_11990, GHO09_06955, GYO01_10530, GYP27_04170, GZK27_10245
UniProt
Find proteins for A0A3T2E047 (Listeria monocytogenes) Explore A0A3T2E047  Go to UniProtKB:  A0A3T2E047

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
FtbO	I [auth O]	146	Listeria monocytogenes	Mutation(s): 0  Gene Names:  AP104_04210, B4X68_12590, EYJ21_12315, EZM42_13155, F1788_11045, FJL03_10565, FPL45_04490, GCV64_11990, GHO09_06955, GYO01_10530, GYP27_04170, GZK27_10245
UniProt
Find proteins for A0A3T2E047 (Listeria monocytogenes) Explore A0A3T2E047  Go to UniProtKB:  A0A3T2E047

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FE (Subject of Investigation/LOI)	P [auth 3], Q [auth o]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.28 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-01-08 
Deposition Author(s): Wang, J.W., Gu, Z.W.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32371254
National Natural Science Foundation of China (NSFC)	China	32171190

Revision History  

• Version 1.0: 2025-01-08
  Type: Initial release