9HQ8 | pdb_00009hq8

Hypothetical protein from ssRNA Leviviricetes sp bacteriophage metagenome, IMGVR_UViG_3300036404_000292

PDB DOI: https://doi.org/10.2210/pdb9HQ8/pdb

Classification: VIRAL PROTEIN
Organism(s): Leviviricetes
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2024-12-16 Released: 2025-12-24
Deposition Author(s): Balta, I., Sisovs, M., Tars, K.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.307 (Depositor), 0.311 (DCC)
R-Value Work:
0.235 (Depositor), 0.245 (DCC)
R-Value Observed:
0.237 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Hypothetical protein from ssRNA Leviviricetes sp bacteriophage metagenome, IMGVR_UViG_3300036404_000292

Balta, I., Sisovs, M., Tars, K.

To be published.

Macromolecule Content

Total Structure Weight: 23.38 kDa
Atom Count: 1,623
Modeled Residue Count: 200
Deposited Residue Count: 210
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein from ssRNA Leviviricetes sp bacteriophage metagenome, IMGVR_UViG_3300036404_000292	A, B	105	Leviviricetes	Mutation(s): 0
UniProt
Find proteins for A0A8S5KZ93 (ssRNA phage Gerhypos.1_9) Explore A0A8S5KZ93 Go to UniProtKB: A0A8S5KZ93
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A8S5KZ93
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.307 (Depositor), 0.311 (DCC)
R-Value Work: 0.235 (Depositor), 0.245 (DCC)
R-Value Observed: 0.237 (Depositor)

Space Group: I 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.44	α = 90
b = 61.29	β = 90
c = 122.61	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-12-24

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-12-24
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.