9HD5 | pdb_00009hd5

Deposited: 2024-11-11 Released: 2025-11-19
Deposition Author(s): Strater, N., Moschuetz, S., Dobelmann, C., Schmies, C.C., Jacobson, K.A., Muller, C.E., Junker, A.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
5'-nucleotidase	A, B	542	Homo sapiens	Mutation(s): 0 Gene Names: NT5E, NT5, NTE EC: 3.1.3.35 (PDB Primary Data), 3.1.3.5 (PDB Primary Data), 3.1.3.89 (PDB Primary Data), 3.1.3.91 (PDB Primary Data), 3.1.3.99 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P21589 (Homo sapiens) Explore P21589 Go to UniProtKB: P21589
PHAROS: P21589 GTEx: ENSG00000135318
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P21589
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1IT6 (Subject of Investigation/LOI) Query on A1IT6 Download Ideal Coordinates CCD File SDF format, chain H [auth B] SDF format, chain E [auth A] MOL2 format, chain H [auth B] MOL2 format, chain E [auth A] mmCIF format, chain H [auth B] mmCIF format, chain E [auth A]	E [auth A], H [auth B]	[[(2~{R},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[[4-[1-(2-fluoranylethyl)-1,2,3-triazol-4-yl]phenyl]methyl-propyl-amino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid C₂₅ H₃₂ Cl F N₈ O₉ P₂ HUGOUIYDRYRLCG-UMCMBGNQSA-N		Interactions Focus chain E [auth A] Focus chain H [auth B] Interactions & Density Focus chain E [auth A] Focus chain H [auth B]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain F [auth B] SDF format, chain G [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] MOL2 format, chain G [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B] mmCIF format, chain G [auth B]	C [auth A], D [auth A], F [auth B], G [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain F [auth B] Focus chain G [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain F [auth B] Focus chain G [auth B]