9HC5 | pdb_00009hc5

Structure of Tulane virus

  • Classification: VIRUS
  • Organism(s): Tulane virus
  • Expression System: Macaca mulatta
  • Mutation(s): No 

  • Deposited: 2024-11-08 Released: 2024-12-04 
  • Deposition Author(s): Bhella, D., Conley, M.J.
  • Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC), Medical Research Council (MRC, United Kingdom)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conformational Flexibility in Capsids Encoded by the Caliciviridae .

Lewis, C.B.Sherry, L.Conley, M.J.Nakashima, M.Akbar, S.Govindan, N.Hosie, M.J.Bhella, D.

(2024) Viruses 16

  • DOI: https://doi.org/10.3390/v16121835
  • Primary Citation of Related Structures:  
    9HC5

  • PubMed Abstract: 

    Caliciviruses are a diverse group of non-enveloped, positive-sense RNA viruses with a wide range of hosts and transmission routes. Norovirus is the most well-known member of the Caliciviridae ; the acute gastroenteritis caused by human norovirus (HuNoV), for example, frequently results in closures of hospital wards and schools during the winter months. One area of calicivirus biology that has gained increasing attention over the past decade is the conformational flexibility exhibited by the protruding (P) domains of the major capsid protein VP1. This was observed in structure analyses of capsids encoded by many species and is often a consequence of environmental cues such as metal ions, changes to pH, or receptor/co-factor engagement. This review summarises the current understanding of P-domain flexibility, discussing the role this region plays in caliciviral infection and immune evasion, and highlighting potential avenues for further investigation.


  • Organizational Affiliation
    • MRC-University of Glasgow Centre for Virus Research, Garscube Campus, 464 Bearsden Road, Glasgow G61 1QH, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein
A, B, C
534Tulane virusMutation(s): 0 
UniProt
Find proteins for B2Y6D0 (Tulane virus)
Explore B2Y6D0 
Go to UniProtKB:  B2Y6D0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB2Y6D0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTISOLDE

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T002239/1
Medical Research Council (MRC, United Kingdom)United KingdomMC_UU_00034/1
Medical Research Council (MRC, United Kingdom)United KingdomMC_UU_12014/7
Medical Research Council (MRC, United Kingdom)United KingdomMC_PC_17135
Medical Research Council (MRC, United Kingdom)United KingdomMR/X011879/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-04
    Type: Initial release
  • Version 1.1: 2025-01-22
    Changes: Data collection, Database references