9H8P

Eugenol Oxidase (EUGO) from Rhodococcus jostii RHA1, mutant DTT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.149 
  • R-Value Observed: 0.150 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Biocatalytic Cleavage of para-Acetoxy Benzyl Ethers: Application to Protecting Group Chemistry

Ashley, B.Demingo, C.Rozeboom, H.Bianciardi, N.Dunleavy, T.Haaksma, J.J.Guo, Y.Fraaije, M.W.

(2025) ACS Catal 15: 105-113


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable vanillyl-alcohol oxidase
A, B, C, D, E
A, B, C, D, E, F, G, H
526Rhodococcus jostii RHA1Mutation(s): 8 
Gene Names: RHA1_ro03282
EC: 1.1.3.38
UniProt
Find proteins for Q0SBK1 (Rhodococcus jostii (strain RHA1))
Explore Q0SBK1 
Go to UniProtKB:  Q0SBK1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ0SBK1
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download Ideal Coordinates CCD File 
DA [auth F]
HA [auth G]
I [auth A]
JA [auth H]
O [auth B]
DA [auth F],
HA [auth G],
I [auth A],
JA [auth H],
O [auth B],
S [auth C],
V [auth D],
Z [auth E]
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
B3P
Query on B3P

Download Ideal Coordinates CCD File 
AA [auth E]
EA [auth F]
J [auth A]
K [auth A]
KA [auth H]
AA [auth E],
EA [auth F],
J [auth A],
K [auth A],
KA [auth H],
P [auth B],
T [auth C],
Y [auth D]
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C11 H26 N2 O6
HHKZCCWKTZRCCL-UHFFFAOYSA-N
MRD
Query on MRD

Download Ideal Coordinates CCD File 
M [auth A](4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
MPD
Query on MPD

Download Ideal Coordinates CCD File 
BA [auth E],
FA [auth F],
L [auth A],
Q [auth B]
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
CA [auth E]
GA [auth F]
IA [auth G]
LA [auth H]
N [auth A]
CA [auth E],
GA [auth F],
IA [auth G],
LA [auth H],
N [auth A],
R [auth B],
U [auth C],
W [auth D],
X [auth D]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.149 
  • R-Value Observed: 0.150 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.348α = 89.75
b = 110.228β = 89.5
c = 117.259γ = 68.43
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-29
    Type: Initial release