9H48 | pdb_00009h48

Mouse Iodothyronine deiodinase 2 catalytic core, mutant - LysLys180AlaAla, Secys-> Cys


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.09 Å
  • R-Value Free: 
    0.169 (Depositor), 0.169 (DCC) 
  • R-Value Work: 
    0.145 (Depositor), 0.144 (DCC) 
  • R-Value Observed: 
    0.146 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Structural Insights into the Iodothyronine Deiodinase 2 Catalytic Core and Deiodinase Catalysis and Dimerization.

Towell, H.Braun, D.Brol, A.di Fonzo, A.Rijntjes, E.Kohrle, J.Schweizer, U.Steegborn, C.

(2024) Biomolecules 14

  • DOI: https://doi.org/10.3390/biom14111373
  • Primary Citation of Related Structures:  
    9H48

  • PubMed Abstract: 

    Iodothyronine deiodinases (Dio) are selenocysteine-containing membrane enzymes that activate and inactivate the thyroid hormones (TH) through reductive iodide eliminations. The three deiodinase isoforms are homodimers sharing highly conserved amino acid sequences, but they differ in their regioselectivities for the deiodination reaction and regulatory features. We have now solved a crystal structure of the mouse deiodinase 2 (Dio2) catalytic domain. It reveals a high overall similarity to the deiodinase 3 structure, supporting the proposed common mechanism, but also Dio2-specific features, likely mediating its unique properties. Activity studies with an artificially enforced Dio dimer further confirm that dimerization is required for activity and requires both the catalytic core and the enzyme's N-terminus. Cross-linking studies reveal the catalytic core's dimerization interface, providing insights into the architecture of the complete, active Dio homodimer.


  • Organizational Affiliation
    • Department of Biochemistry, University of Bayreuth, Universitätsstr. 30, 95447 Bayreuth, Germany.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Type II iodothyronine deiodinase193Mus musculusMutation(s): 3 
Gene Names: Dio2
EC: 1.21.99.4
UniProt
Find proteins for Q9Z1Y9 (Mus musculus)
Explore Q9Z1Y9 
Go to UniProtKB:  Q9Z1Y9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Z1Y9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.09 Å
  • R-Value Free:  0.169 (Depositor), 0.169 (DCC) 
  • R-Value Work:  0.145 (Depositor), 0.144 (DCC) 
  • R-Value Observed: 0.146 (Depositor) 
Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.772α = 90
b = 47.772β = 90
c = 64.686γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany1701/16-1 (SPP 1629)

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release