9GTR | pdb_00009gtr

Cryo-EM structure of a contractile injection system in Streptomyces coelicolor, the baseplate complex in extended state applied 3-fold symmetry.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Function and firing of the Streptomyces coelicolor contractile injection system requires the membrane protein CisA.

Casu, B.Sallmen, J.W.Haas, P.E.Chandra, G.Afanasyev, P.Xu, J.Pilhofer, M.Schlimpert, S.

(2025) Elife 14

  • DOI: https://doi.org/10.7554/eLife.104064
  • Primary Citation of Related Structures:  
    9GTP, 9GTR, 9GTS

  • PubMed Abstract: 

    Bacterial contractile injection systems (CIS) are phage tail-like macromolecular complexes that mediate cell-cell interactions by injecting effector proteins into target cells. CIS from Streptomyces coelicolor (CIS Sc ) are localized in the cytoplasm. Under stress, they induce cell death and impact the Streptomyces life cycle. It remains unknown, however, whether CIS Sc require accessory proteins to directly interact with the cytoplasmic membrane to function. Here, we characterize the putative membrane adaptor CisA, a conserved factor in CIS gene clusters across Streptomyces species. We show by cryo-electron tomography imaging and in vivo assays that CIS Sc contraction and function depend on CisA. Using single-particle cryo-electron microscopy, we provide an atomic model of the extended CIS Sc apparatus; however, CisA is not part of the complex. Instead, our findings show that CisA is a membrane protein with a cytoplasmic N-terminus predicted to interact with CIS Sc components, thereby providing a possible mechanism for mediating CIS Sc recruitment to the membrane and subsequent firing. Our work shows that CIS function in multicellular bacteria is distinct from type VI secretion systems and extracellular CIS, and possibly evolved due to the role CIS Sc play in regulated cell death.


  • Organizational Affiliation
    • Department of Biology, Institute of Molecular Biology & Biophysics, Eidgenössische Technische Hochschule Zürich, Zurich, Switzerland.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gp5/Type VI secretion system Vgr protein OB-fold domain-containing proteinA [auth q],
B [auth r],
C [auth s]
643Streptomyces coelicolor A3(2)Mutation(s): 0 
UniProt
Find proteins for Q9L0P5 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Explore Q9L0P5 
Go to UniProtKB:  Q9L0P5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9L0P5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland31003A_179255
European Research Council (ERC)European Union679209
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T015349/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/X01097X/1

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-18
    Type: Initial release
  • Version 1.1: 2025-07-16
    Changes: Data collection, Database references