9GP5 | pdb_00009gp5

Homodimer of BACH1 F9A mutant BTB domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 
    0.226 (Depositor), 0.237 (DCC) 
  • R-Value Work: 
    0.195 (Depositor), 0.204 (DCC) 
  • R-Value Observed: 
    0.196 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Dual BACH1 regulation by complementary SCF-type E3 ligases.

Goretzki, B.Khoshouei, M.Schroder, M.Penner, P.Egger, L.Stephan, C.Argoti, D.Dierlamm, N.Rada, J.M.Kapps, S.Muller, C.S.Thiel, Z.Mutlu, M.Tschopp, C.Furkert, D.Freuler, F.Haenni, S.Tenaillon, L.Knapp, B.Hinniger, A.Hoppe, P.Schmidt, E.Gutmann, S.Iurlaro, M.Ryzhakov, G.Fernandez, C.

(2024) Cell 187: 7585-7602.e25

  • DOI: https://doi.org/10.1016/j.cell.2024.11.006
  • Primary Citation of Related Structures:  
    8S7D, 8S7E, 9GP5, 9GR9, 9GRA

  • PubMed Abstract: 

    Broad-complex, tramtrack, and bric-à-brac domain (BTB) and CNC homolog 1 (BACH1) is a key regulator of the cellular oxidative stress response and an oncogene that undergoes tight post-translational control by two distinct F-box ubiquitin ligases, SCF FBXO22 and SCF FBXL17 . However, how both ligases recognize BACH1 under oxidative stress is unclear. In our study, we elucidate the mechanism by which FBXO22 recognizes a quaternary degron in a domain-swapped β-sheet of the BACH1 BTB dimer. Cancer-associated mutations and cysteine modifications destabilize the degron and impair FBXO22 binding but simultaneously expose an otherwise shielded degron in the dimer interface, allowing FBXL17 to recognize BACH1 as a monomer. These findings shed light on a ligase switch mechanism that enables post-translational regulation of BACH1 by complementary ligases depending on the stability of its BTB domain. Our results provide mechanistic insights into the oxidative stress response and may spur therapeutic approaches for targeting oxidative stress-related disorders and cancer.


  • Organizational Affiliation
    • Discovery Sciences, Novartis Biomedical Research, Basel, Switzerland. Electronic address: bengoretzki@isomorphiclabs.com.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription regulator protein BACH1A [auth C],
B [auth D]
124Homo sapiensMutation(s): 1 
Gene Names: BACH1
UniProt & NIH Common Fund Data Resources
Find proteins for O14867 (Homo sapiens)
Explore O14867 
Go to UniProtKB:  O14867
PHAROS:  O14867
GTEx:  ENSG00000156273 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14867
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free:  0.226 (Depositor), 0.237 (DCC) 
  • R-Value Work:  0.195 (Depositor), 0.204 (DCC) 
  • R-Value Observed: 0.196 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 31.084α = 90
b = 70.334β = 93.44
c = 65.246γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
autoPROCdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release
  • Version 1.1: 2025-07-02
    Changes: Database references