9GLC | pdb_00009glc

NONO/SFPQ filament: local refinement central units (strand 1)

PDB DOI: https://doi.org/10.2210/pdb9GLC/pdb
EM Map EMD-51438: EMDB EMDataResource

Classification: NUCLEAR PROTEIN
Organism(s): Cricetulus griseus
Mutation(s): No

Deposited: 2024-08-27 Released: 2025-09-10
Deposition Author(s): Rasmussen, T., Bottcher, B.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

A filamentous scaffold for gene regulation

Rasmussen, T., Kuspert, J., Schonemann, L., Geiger, D., Bottcher, B.

To be published.

Macromolecule Content

Total Structure Weight: 673.36 kDa
Atom Count: 14,423
Modeled Residue Count: 1,728
Deposited Residue Count: 6,106
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	A [auth BC] C [auth BE] E [auth AC] G [auth AE] H [auth CC] A [auth BC], C [auth BE], E [auth AC], G [auth AE], H [auth CC], I [auth CE]	703	Cricetulus griseus	Mutation(s): 0
UniProt
Find proteins for A0A8C2LX33 (Cricetulus griseus) Explore A0A8C2LX33 Go to UniProtKB: A0A8C2LX33
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8C2LX33
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-POU domain containing octamer binding	B [auth BD], D [auth BF], F [auth AD], J [auth CF]	472	Cricetulus griseus	Mutation(s): 0
UniProt
Find proteins for A0A8C2L8F1 (Cricetulus griseus) Explore A0A8C2L8F1 Go to UniProtKB: A0A8C2L8F1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8C2L8F1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-09-10

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	359471283
German Research Foundation (DFG)	Germany	456578072
German Research Foundation (DFG)	Germany	525040890

Revision History (Full details and data files)

Version 1.0: 2025-09-10
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.