Download MendeleyKu70/80 anchors DNA polymerase Lambda at sites of DNA synapsis during NHEJ
Chaplin, A.K., Amin, H., Zahid, S., Hardwick, S.W.To be published.
9G9L | pdb_00009g9l
DNA-PK + Polymerase lambda
- PDB DOI: https://doi.org/10.2210/pdb9G9L/pdb
- NAKB: 9G9L
- EM Map EMD-51156: EMDB EMDataResource
- Classification: DNA BINDING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Insect cell expression vector pTIE1, Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2024-07-25 Released: 2025-08-06
- Funding Organization(s): Medical Research Council (MRC, United Kingdom), The Lister Institute of Preventive Medicine
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 4.63 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-dependent protein kinase catalytic subunit | 4,128 | Homo sapiens | Mutation(s): 0 EC: 2.7.11.1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P78527 (Homo sapiens) Explore P78527 Go to UniProtKB: P78527 | |||||
PHAROS: P78527 GTEx: ENSG00000253729 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P78527 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| X-ray repair cross-complementing protein 6 | 609 | Homo sapiens | Mutation(s): 0 Gene Names: XRCC6, G22P1 EC: 3.6.4 (PDB Primary Data), 4.2.99 (PDB Primary Data) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P12956 (Homo sapiens) Explore P12956 Go to UniProtKB: P12956 | |||||
PHAROS: P12956 GTEx: ENSG00000196419 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12956 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| X-ray repair cross-complementing protein 5 | 732 | Homo sapiens | Mutation(s): 0 Gene Names: XRCC5, G22P2 EC: 3.6.4 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P13010 (Homo sapiens) Explore P13010 Go to UniProtKB: P13010 | |||||
PHAROS: P13010 GTEx: ENSG00000079246 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13010 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA polymerase lambda | D [auth F] | 575 | Homo sapiens | Mutation(s): 0 Gene Names: POLL EC: 2.7.7.7 (PDB Primary Data), 4.2.99 (PDB Primary Data) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UGP5 (Homo sapiens) Explore Q9UGP5 Go to UniProtKB: Q9UGP5 | |||||
PHAROS: Q9UGP5 GTEx: ENSG00000166169 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UGP5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein PAXX | E [auth M] | 204 | Homo sapiens | Mutation(s): 0 Gene Names: PAXX, C9orf142, XLS |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BUH6 (Homo sapiens) Explore Q9BUH6 Go to UniProtKB: Q9BUH6 | |||||
GTEx: ENSG00000148362 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9BUH6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA | F [auth D] | 24 | Homo sapiens |  | |
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA | G [auth E] | 23 | Homo sapiens |  | |
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 4.63 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | |
| RECONSTRUCTION | cryoSPARC |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-08-06 Deposition Author(s): Chaplin, A.K., Amin, H., Zahid, S., Hardwick, S.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Medical Research Council (MRC, United Kingdom) | United Kingdom | MR/X00029X/1 |
| The Lister Institute of Preventive Medicine | United Kingdom | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-08-06
Type: Initial release
