9G40 | pdb_00009g40

Structure of the Position 7 CMG-decorated gamma-Tubulin Ring Complex from Pig Brain


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Partial closure of the gamma-tubulin ring complex by CDK5RAP2 activates microtubule nucleation.

Xu, Y.Munoz-Hernandez, H.Krutyholowa, R.Marxer, F.Cetin, F.Wieczorek, M.

(2024) Dev Cell 59: 3161

  • DOI: https://doi.org/10.1016/j.devcel.2024.09.002
  • Primary Citation of Related Structures:  
    9G3X, 9G3Y, 9G3Z, 9G40

  • PubMed Abstract: 

    Microtubule nucleation is templated by the γ-tubulin ring complex (γ-TuRC), but its structure deviates from the geometry of α-/β-tubulin in the microtubule, explaining the complex's poor nucleating activity. Several proteins may activate the γ-TuRC, but the mechanisms underlying activation are not known. Here, we determined the structure of the porcine γ-TuRC purified using CDK5RAP2's centrosomin motif 1 (CM1). We identified an unexpected conformation of the γ-TuRC bound to multiple protein modules containing MZT2, GCP2, and CDK5RAP2, resulting in a long-range constriction of the γ-tubulin ring that brings it in closer agreement with the 13-protofilament microtubule. Additional CDK5RAP2 promoted γ-TuRC decoration and stimulated the microtubule-nucleating activities of the porcine γ-TuRC and a reconstituted, CM1-free human complex in single-molecule assays. Our results provide a structural mechanism for the control of microtubule nucleation by CM1 proteins and identify conformational transitions in the γ-TuRC that prime it for microtubule nucleation.


  • Organizational Affiliation
    • Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zürich, 8093 Zürich, Switzerland.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 3A [auth F]910Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1RN46 (Sus scrofa)
Explore F1RN46 
Go to UniProtKB:  F1RN46
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UniProt GroupF1RN46
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Gamma-tubulin complex componentB [auth G]905Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A480VJI0 (Sus scrofa)
Explore A0A480VJI0 
Go to UniProtKB:  A0A480VJI0
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UniProt GroupA0A480VJI0
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Mitotic-spindle organizing protein 2A isoform X4C [auth X]155Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1RK97 (Sus scrofa)
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Go to UniProtKB:  F1RK97
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UniProt GroupF1RK97
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
CDK5 regulatory subunit-associated protein 2D [auth u],
E [auth v]
1,893Homo sapiensMutation(s): 0 
Gene Names: CDK5RAP2CEP215KIAA1633
UniProt & NIH Common Fund Data Resources
Find proteins for Q96SN8 (Homo sapiens)
Explore Q96SN8 
Go to UniProtKB:  Q96SN8
PHAROS:  Q96SN8
GTEx:  ENSG00000136861 
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UniProt GroupQ96SN8
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerlandTMSGI3_211309
Swiss National Science FoundationSwitzerland310030_208120

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-02
    Type: Initial release
  • Version 1.1: 2024-10-09
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2024-12-18
    Changes: Data collection, Database references
  • Version 1.3: 2025-07-02
    Changes: Data collection