9FYC | pdb_00009fyc

The barley MLA13-AVRA13 heterodimer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The barley MLA13-AVR A13 heterodimer reveals principles for immunoreceptor recognition of RNase-like powdery mildew effectors.

Lawson, A.W.Flores-Ibarra, A.Cao, Y.An, C.Neumann, U.Gunkel, M.Saur, I.M.L.Chai, J.Behrmann, E.Schulze-Lefert, P.

(2025) EMBO J 44: 3210-3230

  • DOI: https://doi.org/10.1038/s44318-025-00373-9
  • Primary Citation of Related Structures:  
    9FYC

  • PubMed Abstract: 

    Co-evolution between cereals and pathogenic grass powdery mildew fungi is exemplified by sequence diversification of an allelic series of barley resistance genes encoding Mildew Locus A (MLA) nucleotide-binding leucine-rich repeat (NLR) immunoreceptors with an N-terminal coiled-coil domain (CNLs). Each immunoreceptor recognises a matching, strain-specific powdery mildew effector encoded by an avirulence gene (AVR a ). We present here the cryo-EM structure of barley MLA13 in complex with its cognate effector AVR A13 -1. The effector adopts an RNase-like fold when bound to MLA13 in planta, similar to crystal structures of other RNase-like AVR A effectors unbound to receptors. AVR A13 -1 interacts via its basal loops with MLA13 C-terminal leucine-rich repeats (LRRs) and the central winged helix domain (WHD). Co-expression of structure-guided MLA13 and AVR A13 -1 substitution variants show that the receptor-effector interface plays an essential role in mediating immunity-associated plant cell death. Furthermore, by combining structural information from the MLA13-AVR A13 -1 heterocomplex with sequence alignments of other MLA receptors, we engineered a single amino acid substitution in MLA7 that enables expanded effector detection of AVR A13 -1 and the virulent variant AVR A13 -V2. In contrast to the pentameric conformation of previously reported effector-activated CNL resistosomes, MLA13 was purified and resolved as a stable heterodimer from an in planta expression system. Our study suggests a common structural principle for RNase-like effector binding to MLAs and highlights the utility of structure-guided engineering of plant immune receptors for broadening their pathogen effector recognition capabilities.


  • Organizational Affiliation
    • Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CC-NBS-LRR resistance protein MLA13959Hordeum vulgareMutation(s): 2 
UniProt
Find proteins for Q8GSK4 (Hordeum vulgare)
Explore Q8GSK4 
Go to UniProtKB:  Q8GSK4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8GSK4
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
CSEP0372 putative effector protein122Blumeria graminisMutation(s): 0 
Gene Names: BGHDH14_bghG002861000001001
UniProt
Find proteins for N1JFM8 (Blumeria graminis f. sp. hordei (strain DH14))
Explore N1JFM8 
Go to UniProtKB:  N1JFM8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupN1JFM8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21_5207

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyINST 216/949-1 FUGG
German Research Foundation (DFG)GermanyINST 216/512/1 FUGG

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-12
    Type: Initial release
  • Version 1.1: 2025-02-26
    Changes: Data collection, Database references
  • Version 1.2: 2025-06-11
    Changes: Data collection, Database references