9FN1 | pdb_00009fn1

360 A Loki CHMP4-7 rods


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.55 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The Asgard archaeal ESCRT-III system forms helical filaments and remodels eukaryotic-like membranes.

Melnikov, N.Junglas, B.Halbi, G.Nachmias, D.Zerbib, E.Gueta, N.Upcher, A.Zalk, R.Sachse, C.Bernheim-Groswasser, A.Elia, N.

(2025) EMBO J 44: 665-681

  • DOI: https://doi.org/10.1038/s44318-024-00346-4
  • Primary Citation of Related Structures:  
    9FN1

  • PubMed Abstract: 

    The ESCRT machinery mediates membrane remodeling in numerous processes in cells including cell division and nuclear membrane reformation. The identification of ESCRT homologs in Asgard archaea, currently considered the closest prokaryotic relative of eukaryotes, implies a role for ESCRTs in the membrane remodeling processes that occurred during eukaryogenesis. Yet, the function of these distant ESCRT homologs is mostly unresolved. Here we show that Asgard ESCRT-III proteins of the Lokiarcheota self-assemble into helical filaments, a hallmark of the ESCRT system. We determined the cryo-EM structure of the filaments at 3.6 Å resolution and found that they share features of bacterial and eukaryotic ESCRT-III assemblies. Markedly, Asgard ESCRT-III filaments bound and deformed eukaryotic-like membrane vesicles. Oligonucleotides facilitated the assembly of ESCRT-III filaments and tuned the extent of membrane remodeling. The ability of Asgard archaeal ESCRTs to remodel eukaryotic-like membranes, which are fundamentally different from archaeal membranes, and the structural properties of these proteins places them at the junction between prokaryotes and eukaryotes.


  • Organizational Affiliation
    • Department of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, 84105, Israel.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Vps20/32/60-like protein (ESCRT-III)A [auth U]218Promethearchaeia archaeonMutation(s): 0 
Gene Names: Lokiarch_16760
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.55 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Israel Science FoundationIsrael1323/18
Israel Science FoundationIsrael2101/20

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-16
    Type: Initial release
  • Version 1.1: 2025-07-09
    Changes: Data collection
  • Version 1.2: 2025-10-29
    Changes: Data collection, Database references