9FKO | pdb_00009fko

Arm segment of bacteriophage phi812

PDB DOI: https://doi.org/10.2210/pdb9FKO/pdb

Classification: VIRUS
Organism(s): Staphylococcus phage 812, Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-06-03 Released: 2025-06-18
Deposition Author(s): Siborova, M., Baska, R., Binovsky, J., Plevka, P.
Funding Organization(s): European Research Council (ERC), Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.275 (Depositor), 0.275 (DCC)
R-Value Work:
0.245 (Depositor), 0.245 (DCC)
R-Value Observed:
0.247 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Cell attachment and tail contraction of S. aureus phage phi812

Binovsky, J., Siborova, M., Plevka, P.

To be published.

Macromolecule Content

Total Structure Weight: 116.66 kDa
Atom Count: 8,239
Modeled Residue Count: 1,051
Deposited Residue Count: 1,051
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Baseplate protein	A, B, C, D, E A, B, C, D, E, F	174	Staphylococcus phage 812	Mutation(s): 0 Gene Names: 812_119, 812_121, 812a_121, 812F1_121, K1/420_121, K1_121
UniProt
Find proteins for Q4Z9Z7 (Staphylococcus phage G1) Explore Q4Z9Z7 Go to UniProtKB: Q4Z9Z7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q4Z9Z7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Unknown peptide	G	7	Escherichia coli	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.275 (Depositor), 0.275 (DCC)
R-Value Work: 0.245 (Depositor), 0.245 (DCC)
R-Value Observed: 0.247 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.93	α = 90
b = 75.14	β = 109.87
c = 94.45	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
XDS	data reduction
XDS	data scaling
SHELXD	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-06-18

Deposition Author(s):

Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	101043452
Other government	Czech Republic	LX22NP05103

Revision History (Full details and data files)

Version 1.0: 2025-06-18
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.