9F82 | pdb_00009f82

Arbitrium receptor from ATCC13952 phage in complex with GVVRGA peptide

• PDB DOI: https://doi.org/10.2210/pdb9F82/pdb

• Classification: DNA BINDING PROTEIN
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2024-05-06 Released: 2025-05-21 
• Deposition Author(s): Gallego del Sol, F., Marina, A.
• Funding Organization(s): Ministerio de Ciencia e Innovacion (MCIN)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free: 
  0.277 (Depositor), 0.285 (DCC) 
• R-Value Work: 
  0.228 (Depositor), 0.237 (DCC) 
• R-Value Observed: 
  0.231 (Depositor) 

Starting Model: experimental

Literature

Arbitrium receptor from ATCC13952 phage

Gallego del Sol, F., Marina, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 183.44 kDa 
• Atom Count: 11,488 
• Modeled Residue Count: 1,388 
• Deposited Residue Count: 1,568 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Arbitrium receptor from ATCC13952 phage	A, C, E, G	386	Bacillus subtilis	Mutation(s): 0  Gene Names: KS08_10720
UniProt
Find proteins for O31927 (Bacillus subtilis (strain 168)) Explore O31927  Go to UniProtKB:  O31927

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GLY-VAL-VAL-ARG-GLY-ALA	B, D, F, H [auth K]	6	Bacillus subtilis	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free:  0.277 (Depositor), 0.285 (DCC) 
• R-Value Work:  0.228 (Depositor), 0.237 (DCC) 
• R-Value Observed: 0.231 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.343	α = 90
b = 82.959	β = 90.88
c = 146.86	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-05-21 
Deposition Author(s): Gallego del Sol, F., Marina, A.

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Funding Organization	Location	Grant Number
Ministerio de Ciencia e Innovacion (MCIN)	Spain	--

Revision History  

• Version 1.0: 2025-05-21
  Type: Initial release