9F5S

EVA71 E096A native particle

• PDB DOI: https://doi.org/10.2210/pdb9F5S/pdb
• EM Map EMD-50200: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Enterovirus A71
• Expression System: Homo sapiens
• Mutation(s): Yes 


• Deposited: 2024-04-30 Released: 2024-09-04 
• Deposition Author(s): Kingston, N.J., Stonehouse, N.J., Rowlands, D.J., Hogle, J.M., Filman, D.J., Snowden, J.S.S.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), Medical Research Council (MRC, United Kingdom), Wellcome Trust

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Reappraisal of the mechanism of the enterovirus VP0 maturation cleavage based on the structure of a stabilised assembly intermediate

Kingston, N.J., Snowden, J.S.S., Grehan, K.G., Hall, P.K., Hietanen, E.V., Passchier, T.C., Polyak, S.J., Filman, D.J., Hogle, J.M., Rowlands, D.J., Stonehouse, N.J.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 180-mer - A60B60C60 Pseudo Symmetry: Icosahedral - I  (Explore in 3D)
Pseudo Stoichiometry: Hetero 180-mer - A120B60 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 94.82 kDa 
• Atom Count: 6,020 
• Modelled Residue Count: 773 
• Deposited Residue Count: 862 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VP0	A	323	Enterovirus A71	Mutation(s): 1
UniProt
Find proteins for D4QGA2 (Human enterovirus 71) Explore D4QGA2  Go to UniProtKB:  D4QGA2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
VP3	B	242	Enterovirus A71	Mutation(s): 0
UniProt
Find proteins for D4QGA3 (Human enterovirus 71) Explore D4QGA3  Go to UniProtKB:  D4QGA3

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
VP1	C	297	Enterovirus A71	Mutation(s): 0  EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for A0A2L1GIK5 (Human enterovirus 71) Explore A0A2L1GIK5  Go to UniProtKB:  A0A2L1GIK5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SPH (Subject of Investigation/LOI)	D [auth C]	SPHINGOSINE C18 H37 N O2 WWUZIQQURGPMPG-MSOLQXFVSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-04 
Deposition Author(s): Kingston, N.J., Stonehouse, N.J., Rowlands, D.J., Hogle, J.M., Filman, D.J., Snowden, J.S.S.

---

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01 AI 169457-0
Medical Research Council (MRC, United Kingdom)	United Kingdom	MR/P022626/1
Wellcome Trust	United Kingdom	204825/Z/16/Z

Revision History  

• Version 1.0: 2024-09-04
  Type: Initial release