9F36 | pdb_00009f36

Crystal estructure of AimR from ATCC13952 phage

PDB DOI: https://doi.org/10.2210/pdb9F36/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Bacillus subtilis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-04-25 Released: 2025-05-14
Deposition Author(s): Gallego del Sol, F., Marina, A.
Funding Organization(s): European Research Council (ERC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.247 (Depositor), 0.251 (DCC)
R-Value Work:
0.193 (Depositor), 0.202 (DCC)
R-Value Observed:
0.195 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal estructure of AimR from ATCC13952 phage

Gallego del Sol, F., Marina, A.

To be published.

Macromolecule Content

Total Structure Weight: 90.7 kDa
Atom Count: 5,771
Modeled Residue Count: 683
Deposited Residue Count: 772
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Arbitrium receptor from ATCC13952 phage	A, B	386	Bacillus subtilis	Mutation(s): 0 Gene Names: KS08_10720
UniProt
Find proteins for O31927 (Bacillus subtilis (strain 168)) Explore O31927 Go to UniProtKB: O31927
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O31927
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.247 (Depositor), 0.251 (DCC)
R-Value Work: 0.193 (Depositor), 0.202 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.989	α = 90
b = 150.767	β = 90
c = 67.335	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
MOLREP	phasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2025-05-14

Deposition Author(s):

Gallego del Sol, F.

Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	--

Revision History (Full details and data files)

Version 1.0: 2025-05-14
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.