9EWR | pdb_00009ewr

Crystal structure of an inverse charged cutinase mutant from Saccharopolyspora flava (611)

PDB DOI: https://doi.org/10.2210/pdb9EWR/pdb

Classification: HYDROLASE
Organism(s): Saccharopolyspora flava
Expression System: Escherichia coli B
Mutation(s): Yes

Deposited: 2024-04-04 Released: 2025-04-16
Deposition Author(s): Zahn, M., Green, K., Oliveira, L., Lichtenstein, B.R.
Funding Organization(s): UK Research and Innovation (UKRI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.17 Å
R-Value Free:
0.204 (Depositor), 0.204 (DCC)
R-Value Work:
0.186 (Depositor), 0.186 (DCC)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Redesigning surface charge to control substrate morphology preference of a PET-hydrolase

Oliveira-Pessoa, L., Lichtenstein, B.R.

To be published.

Macromolecule Content

Total Structure Weight: 59.34 kDa
Atom Count: 4,493
Modeled Residue Count: 516
Deposited Residue Count: 538
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
cutinase	A, B	269	Saccharopolyspora flava	Mutation(s): 23 Gene Names: SAMN05660874_00127 EC: 3.1.1.74
UniProt
Find proteins for A0A1I6NU60 (Saccharopolyspora flava) Explore A0A1I6NU60 Go to UniProtKB: A0A1I6NU60
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1I6NU60
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.17 Å
R-Value Free: 0.204 (Depositor), 0.204 (DCC)
R-Value Work: 0.186 (Depositor), 0.186 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.084	α = 90
b = 41.316	β = 99.815
c = 124.088	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
STARANISO	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-04-16

Deposition Author(s):

Lichtenstein, B.R.

Funding Organization	Location	Grant Number
UK Research and Innovation (UKRI)	United Kingdom	Research England

Revision History (Full details and data files)

Version 1.0: 2025-04-16
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.