9EP3 | pdb_00009ep3

Structure of the SA2/SCC1/WAPL complex

• PDB DOI: https://doi.org/10.2210/pdb9EP3/pdb

• Classification: GENE REGULATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-03-16 Released: 2025-10-01 
• Deposition Author(s): Graham, J.J., Panne, D.
• Funding Organization(s): Wellcome Trust, Medical Research Council (MRC, United Kingdom)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.08 Å
• R-Value Free: 
  0.268 (Depositor), 0.265 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.223 (DCC) 
• R-Value Observed: 
  0.227 (Depositor) 

Starting Model: experimental

Literature

Structural basis for cohesin release and control of genome looping by WAPL

Graham, J.J., Panne, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 132.3 kDa 
• Atom Count: 8,382 
• Modeled Residue Count: 1,022 
• Deposited Residue Count: 1,143 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cohesin subunit SA-2	A	981	Homo sapiens	Mutation(s): 0  Gene Names: STAG2, SA2
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N3U4 (Homo sapiens) Explore Q8N3U4  Go to UniProtKB:  Q8N3U4
PHAROS:  Q8N3U4 GTEx:  ENSG00000101972

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Double-strand-break repair protein rad21 homolog	B	140	Homo sapiens	Mutation(s): 0  Gene Names: RAD21, HR21, KIAA0078, NXP1, SCC1
UniProt & NIH Common Fund Data Resources
Find proteins for O60216 (Homo sapiens) Explore O60216  Go to UniProtKB:  O60216
PHAROS:  O60216 GTEx:  ENSG00000164754

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Wings apart-like protein homolog	C	22	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z5K2 (Homo sapiens) Explore Q7Z5K2  Go to UniProtKB:  Q7Z5K2
PHAROS:  Q7Z5K2 GTEx:  ENSG00000062650

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.08 Å
• R-Value Free:  0.268 (Depositor), 0.265 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.223 (DCC) 
• R-Value Observed: 0.227 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.433	α = 90
b = 107.44	β = 90
c = 181.913	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-10-01 
Deposition Author(s): Graham, J.J., Panne, D.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	221881/Z/20/Z
Medical Research Council (MRC, United Kingdom)	United Kingdom	MR/W001667/1

Revision History  

• Version 1.0: 2025-10-01
  Type: Initial release