Skip to main content

 9EN1 | pdb_00009en1

FliG interacting domain of SpFlhF (FID)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 
    0.268 (Depositor), 0.271 (DCC) 
  • R-Value Work: 
    0.235 (Depositor), 0.252 (DCC) 
  • R-Value Observed: 
    0.236 (Depositor) 

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9EN1

This is version 1.1 of the entry. See complete history. 

Literature

Polar confinement of a macromolecular machine by an SRP-type GTPase.

Dornes, A., Schmidt, L.M., Mais, C.N., Hook, J.C., Pane-Farre, J., Kressler, D., Thormann, K., Bange, G.

(2024) Nat Commun 15: 5797-5797

  • DOI: https://doi.org/10.1038/s41467-024-50274-4
  • Primary Citation Related Structures: 
    9EN1

  • PubMed Abstract: 

    The basal structure of the bacterial flagellum includes a membrane embedded MS-ring (formed by multiple copies of FliF) and a cytoplasmic C-ring (composed of proteins FliG, FliM and FliN). The SRP-type GTPase FlhF is required for directing the initial flagellar protein FliF to the cell pole, but the mechanisms are unclear. Here, we show that FlhF anchors developing flagellar structures to the polar landmark protein HubP/FimV, thereby restricting their formation to the cell pole. Specifically, the GTPase domain of FlhF interacts with HubP, while a structured domain at the N-terminus of FlhF binds to FliG. FlhF-bound FliG subsequently engages with the MS-ring protein FliF. Thus, the interaction of FlhF with HubP and FliG recruits a FliF-FliG complex to the cell pole. In addition, the modulation of FlhF activity by the MinD-type ATPase FlhG controls the interaction of FliG with FliM-FliN, thereby regulating the progression of flagellar assembly at the pole.


  • Organizational Affiliation: 
    • Philipps-University Marburg, Center for Synthetic Microbiology (SYNMIKRO) and Department of Chemistry, Hans-Meerwein-Strasse 6, C07, 35043, Marburg, Germany.

Macromolecule Content 

  • Total Structure Weight: 70.47 kDa 
  • Atom Count: 4,269 
  • Modeled Residue Count: 562 
  • Deposited Residue Count: 636 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar biosynthesis protein FlhF
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
53Shewanella putrefaciens CN-32Mutation(s): 0 
Gene Names: Sputcn32_2561
UniProt
Find proteins for A4Y8J9 (Shewanella putrefaciens (strain CN-32 / ATCC BAA-453))
Explore A4Y8J9 
Go to UniProtKB:  A4Y8J9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA4Y8J9
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free:  0.268 (Depositor), 0.271 (DCC) 
  • R-Value Work:  0.235 (Depositor), 0.252 (DCC) 
  • R-Value Observed: 0.236 (Depositor) 
Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 106.53α = 90
b = 106.53β = 90
c = 106.62γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany495924434

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-26
    Type: Initial release
  • Version 1.1: 2026-10-14
    Changes: Database references