9EAQ | pdb_00009eaq

Murine Norovirus MNV-1 with allosteric escape mutation V339I

PDB DOI: https://doi.org/10.2210/pdb9EAQ/pdb
EM Map EMD-47840: EMDB EMDataResource

Classification: VIRUS
Organism(s): Murine norovirus 1
Mutation(s): Yes

Deposited: 2024-11-11 Released: 2025-05-07
Deposition Author(s): Smith, T.J., Sherman, M.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Murine norovirus allosteric escape mutants mimic gut activation.

Sherman, M., Smith, H., Cox, F., Lynch, G., Pettitt, M., Wobus, C., Smith, T.

To be published.

Macromolecule Content

Total Structure Weight: 175.75 kDa
Atom Count: 11,799
Modeled Residue Count: 1,535
Deposited Residue Count: 1,620
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP1	A, B, C	540	Murine norovirus 1	Mutation(s): 2
UniProt
Find proteins for Q80J94 (Norovirus (isolate Mouse/NoV/United States/MNV1/2002/GV)) Explore Q80J94 Go to UniProtKB: Q80J94
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q80J94
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21rc1_5134:

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-05-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	NIH 1R01-AI141465

Revision History (Full details and data files)

Version 1.0: 2025-05-07
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.