Download MendeleyCryo-EM structure of Pre-Chi dynein bound to Lis1
Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.To be published.
9E22 | pdb_00009e22
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
- PDB DOI: https://doi.org/10.2210/pdb9E22/pdb
- EM Map EMD-47429: EMDB EMDataResource
- Classification: MOTOR PROTEIN
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2024-10-21 Released: 2025-07-09
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.30 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytoplasmic dynein 1 heavy chain 1 | 4,843 | Homo sapiens | Mutation(s): 0 Gene Names: DYNC1H1, DHC1, DNCH1, DNCL, DNECL, DYHC, KIAA0325 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q14204 (Homo sapiens) Explore Q14204 Go to UniProtKB: Q14204 | |||||
PHAROS: Q14204 GTEx: ENSG00000197102 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q14204 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Platelet-activating factor acetylhydrolase IB subunit beta | B [auth E] | 411 | Homo sapiens | Mutation(s): 0 Gene Names: PAFAH1B1, LIS1, MDCR, MDS, PAFAHA |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P43034 (Homo sapiens) Explore P43034 Go to UniProtKB: P43034 | |||||
PHAROS: P43034 GTEx: ENSG00000007168 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P43034 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP (Subject of Investigation/LOI) Query on ATP | D [auth A], F [auth A] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N |  | ||
| ADP (Subject of Investigation/LOI) Query on ADP | C [auth A], G [auth A] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| MG (Subject of Investigation/LOI) Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.30 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-07-09 Deposition Author(s): Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | T32 GM139795 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35 GM145296 |
Revision History (Full details and data files)
- Version 1.0: 2025-07-09
Type: Initial release
