9DYV | pdb_00009dyv

Assembly and functional mechanisms of the Hsp70-Hsp40 chaperone machinery


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Mechanisms of assembly and function of the Hsp70-Hsp40 chaperone machinery.

Jiang, Y.Ibrahim, Z.Xia, Y.Clay, M.Myasnikov, A.Immadisetty, K.Xia, Z.Tang, L.Rossi, P.Ganguly, P.Liu, J.Miller, D.Che, M.Palacios, S.M.Kramer, G.Bukau, B.Kalodimos, C.G.

(2025) Mol Cell 85: 4032

  • DOI: https://doi.org/10.1016/j.molcel.2025.09.023
  • Primary Citation of Related Structures:  
    9DYU, 9DYV

  • PubMed Abstract: 

    Hsp70 and Hsp40 molecular chaperones form a central machinery that remodels client proteins involved in numerous biological processes. Here, we integrated cryo-electron microscopy and nuclear magnetic resonance spectroscopy to determine the architecture of the full-length Hsp70-Hsp40 machinery. The structure of the complex in a physiologically inhibited state reveals distinct regulatory mechanisms. In the active state, the Hsp40 glycine-phenylalanine (G/F)-rich region acts as a pseudo-substrate for Hsp70, directly modulating refolding. This region also maintains Hsp40 in an autoinhibited state; upon binding to Hsp70, the inhibition is disrupted, exposing a cryptic client-binding site that enables client engagement and refolding. Transitions between these states are central to controlling refolding efficiency. Disrupting either the autoinhibited state or the G/F-Hsp70 interaction impairs function and elicits a compensatory heat shock response in cells. Our findings uncover the regulatory dynamics of a fundamental chaperone system, with broad implications for understanding protein homeostasis and the cellular response to stress.


  • Organizational Affiliation
    • State Key Laboratory of Pharmaceutical Biotechnology, Department of Oncology, Nanjing Drum Tower Hospital, School of Life Sciences, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China; Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chaperone protein DnaJ 2118Thermus thermophilusMutation(s): 0 
Gene Names: dnaJ2TTHA1489
UniProt
Find proteins for Q56237 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q56237 
Go to UniProtKB:  Q56237
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ56237
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR35 GM122462

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-22
    Type: Initial release
  • Version 1.1: 2025-10-29
    Changes: Database references
  • Version 1.2: 2025-11-19
    Changes: Database references