9DC2

Adeno-associated virus 8 capsid

• PDB DOI: https://doi.org/10.2210/pdb9DC2/pdb
• EM Map EMD-46740: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): adeno-associated virus 8
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2024-08-25 Released: 2024-11-27 
• Deposition Author(s): Mietzsch, M., McKenna, R.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.41 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural Characterization and Epitope Mapping of the AAVX Affinity Purification Ligand

Mietzsch, M., Kamat, M., Basso, K., Chipman, P., Huiskonen, J.T., McKenna, R.

(null) Mol Ther Methods Clin Dev 

• DOI: https://doi.org/10.1016/j.omtm.2024.101377

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 3,596.63 kDa 
• Atom Count: 248,460 
• Modelled Residue Count: 31,200 
• Deposited Residue Count: 32,100 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	535	adeno-associated virus 8	Mutation(s): 0
UniProt
Find proteins for Q8JQF8 (adeno-associated virus 8) Explore Q8JQF8  Go to UniProtKB:  Q8JQF8

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.41 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-27 
Deposition Author(s): Mietzsch, M., McKenna, R.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM082946

Revision History  

• Version 1.0: 2024-11-27
  Type: Initial release