9CIA

T cell receptor complex

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

T cell receptor complex

Gully, B.S., Rossjohn, J.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
UCHT1 Fab 2
A, C
107Homo sapiensMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
UCHT1 Fab chain
B, D
120Homo sapiensMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD3 zeta chainE [auth a],
F [auth b]		29Homo sapiensMutation(s): 0 
Gene Names: CD247, CD3Z, T3Z, TCRZ
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P20963 (Homo sapiens)
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Go to UniProtKB:  P20963
PHAROS:  P20963
GTEx:  ENSG00000198821 
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UniProt GroupP20963
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD3 epsilon chainG [auth e],
H [auth f]		123Homo sapiensMutation(s): 0 
Gene Names: CD3E, T3E
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P07766 (Homo sapiens)
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PHAROS:  P07766
GTEx:  ENSG00000198851 
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UniProt GroupP07766
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
T cell receptor delta constantI [auth m]35Homo sapiensMutation(s): 0 
Gene Names: TRDC
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
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PHAROS:  B7Z8K6
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UniProt GroupB7Z8K6
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
T cell receptor gamma constant 1J [auth n]36Homo sapiensMutation(s): 0 
Gene Names: TRGC1, TCRGC1
Membrane Entity: Yes 
UniProt
Find proteins for P0CF51 (Homo sapiens)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD3 delta chainK [auth d]106Homo sapiensMutation(s): 0 
Gene Names: CD3D, T3D
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P04234 (Homo sapiens)
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PHAROS:  P04234
GTEx:  ENSG00000167286 
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UniProt GroupP04234
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD3 gamma chainL [auth g]114Homo sapiensMutation(s): 0 
Gene Names: CD3G, T3G
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P09693 (Homo sapiens)
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PHAROS:  P09693
GTEx:  ENSG00000160654 
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UniProt GroupP09693
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CLR
Query on CLR
Download Ideal Coordinates CCD File 
M [auth b]CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2
RECONSTRUCTIONcryoSPARCv4.2.0

Structure Validation

View Full Validation Report



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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaDP230102073

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-31
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Data collection, Structure summary