9C7N | pdb_00009c7n

Crystal Structure of the GL3 ACT-like Domain

PDB DOI: https://doi.org/10.2210/pdb9C7N/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-06-10 Released: 2025-10-08
Deposition Author(s): Ghanbarpour, A., Lee, Y.S., Silwal, J., Geiger, J.H., Grotewold, E.
Funding Organization(s): National Science Foundation (NSF, United States)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free:
0.284 (Depositor), 0.287 (DCC)
R-Value Work:
0.237 (Depositor), 0.242 (DCC)
R-Value Observed:
0.242 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal Structure of the GL3 ACT-like Domain.

Ghanbarpour, A., Lee, Y.S., Silwal, J., Geiger, J.H., Grotewold, E.

To be published.

Macromolecule Content

Total Structure Weight: 47.11 kDa
Atom Count: 3,024
Modeled Residue Count: 402
Deposited Residue Count: 430
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor GLABRA 3	A, B, C, D, E	86	Arabidopsis thaliana	Mutation(s): 0 Gene Names: GL3, BHLH1, EN31, MYC6, SST, At5g41315, MYC6.2
UniProt
Find proteins for Q9FN69 (Arabidopsis thaliana) Explore Q9FN69 Go to UniProtKB: Q9FN69
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9FN69
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free: 0.284 (Depositor), 0.287 (DCC)
R-Value Work: 0.237 (Depositor), 0.242 (DCC)
R-Value Observed: 0.242 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.859	α = 90
b = 83.524	β = 90
c = 88.398	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-10-08

Deposition Author(s):

Ghanbarpour, A.

Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	MCB-1822343
National Science Foundation (NSF, United States)	United States	MCB-1513807

Revision History (Full details and data files)

Version 1.0: 2025-10-08
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.