9C4F | pdb_00009c4f

Infectious B19V capsid


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Infectious parvovirus B19 circulates in the blood coated with active host protease inhibitors.

Lee, H.Assaraf, R.Subramanian, S.Goetschius, D.Bieri, J.DiNunno, N.M.Leisi, R.Bator, C.M.Hafenstein, S.L.Ros, C.

(2024) Nat Commun 15: 9543-9543

  • DOI: https://doi.org/10.1038/s41467-024-53794-1
  • Primary Citation of Related Structures:  
    9C27, 9C2T, 9C4F, 9C4N, 9D7K

  • PubMed Abstract: 

    The lack of a permissive cell culture system has limited high-resolution structures of parvovirus B19 (B19V) to virus-like particles (VLPs). In this study, we present the atomic resolution structure (2.2 Å) of authentic B19V purified from a patient blood sample. There are significant differences compared to non-infectious VLPs. Most strikingly, two host protease inhibitors (PIs), inter-alpha-trypsin inhibitor heavy chain 4 (ITIH4) and serpinA3, were identified in complex with the capsids in all patient samples tested. The ITIH4 binds specifically to the icosahedral fivefold axis and serpinA3 occupies the twofold axis. The protein-coated virions remain infectious, and the capsid-associated PIs retain activity; however, upon virion interaction with target cells, the PIs dissociate from the capsid prior to viral entry. Our finding of an infectious virion shielded by bound host serum proteins suggests an evolutionarily favored phenomenon to evade immune surveillance and escape host protease activity.


  • Organizational Affiliation

    The Hormel Institute, University of Minnesota, Austin, MN, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein 2A,
B,
C [auth E],
D [auth C],
E [auth D]
554Human parvovirus B19Mutation(s): 0 
UniProt
Find proteins for Q6RCN1 (Human parvovirus B19)
Explore Q6RCN1 
Go to UniProtKB:  Q6RCN1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6RCN1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Inter-alpha-trypsin inhibitor heavy chain H4F [auth I]930Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q14624 (Homo sapiens)
Explore Q14624 
Go to UniProtKB:  Q14624
PHAROS:  Q14624
GTEx:  ENSG00000055955 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14624
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-16
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Data collection, Database references