9C08 | pdb_00009c08

Structure of Sialyl transferase from Pasturella Multocida

PDB DOI: https://doi.org/10.2210/pdb9C08/pdb
EM Map EMD-45076: EMDB EMDataResource

Classification: TRANSFERASE
Organism(s): Pasteurella
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-05-24 Released: 2025-06-11
Deposition Author(s): Subramanian, R., Dhanabalan, K.
Funding Organization(s): Department of Biotechnology (DBT, India)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Ambient Ionization Mass Spectrometry and Cryo-Electron Microscopy for Label-Free Enzyme Characterization

Morato Gutierrez, N.M., Dhanabalan, K.

To be published.

Macromolecule Content

Total Structure Weight: 142.79 kDa
Atom Count: 7,420
Modeled Residue Count: 892
Deposited Residue Count: 1,212
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	A, B, C, D	303	Pasteurella	Mutation(s): 0 Gene Names: PM1174
UniProt
Find proteins for Q9CLP3 (Pasteurella multocida (strain Pm70)) Explore Q9CLP3 Go to UniProtKB: Q9CLP3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9CLP3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.1
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-06-11

Deposition Author(s):

Subramanian, R.

Funding Organization	Location	Grant Number
Department of Biotechnology (DBT, India)	India	DBT/PR12422/MED/31/287/2014

Revision History (Full details and data files)

Version 1.0: 2025-06-11
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.