9BX0 | pdb_00009bx0

Structure of influenza A RNP, 4xNP local reconstruction, class 4


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular basis of influenza ribonucleoprotein complex assembly and processive RNA synthesis.

Peng, R.Xu, X.Nepal, B.Gong, Y.Li, F.Ferretti, M.B.Zhou, M.Lynch, K.W.Burslem, G.M.Kortagere, S.Marmorstein, R.Chang, Y.W.

(2025) Science 388: eadq7597-eadq7597

  • DOI: https://doi.org/10.1126/science.adq7597
  • Primary Citation of Related Structures:  
    9BWV, 9BWZ, 9BX0, 9BX1, 9BX4, 9C4H

  • PubMed Abstract: 

    Influenza viruses replicate and transcribe their genome in the context of a conserved ribonucleoprotein (RNP) complex. By integrating cryo-electron microscopy single-particle analysis and cryo-electron tomography, we define the influenza RNP as a right-handed, antiparallel double helix with the viral RNA encapsidated in the minor groove. Individual nucleoprotein subunits are connected by a flexible tail loop that inserts into a conserved pocket in its neighbor. We visualize the viral polymerase in RNP at different functional states, revealing how it accesses the RNA template while maintaining the double-helical architecture of RNP by strand sliding. Targeting the tail loop binding interface, we identify lead compounds as potential anti-influenza inhibitors. These findings elucidate the molecular determinants underpinning influenza virus replication and highlight a promising target for antiviral development.


  • Organizational Affiliation
    • Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoprotein
A, B, C, D
498Influenza A virusMutation(s): 0 
UniProt
Find proteins for P15682 (Influenza A virus (strain A/Wilson-Smith/1933 H1N1))
Explore P15682 
Go to UniProtKB:  P15682
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15682
Sequence Annotations
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains LengthOrganismImage
viral RNA
E, F
60Influenza A virus
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
David and Lucile Packard FoundationUnited States2019-69645

Revision History  (Full details and data files)

  • Version 1.0: 2025-05-14
    Type: Initial release
  • Version 1.1: 2025-05-28
    Changes: Data collection, Database references