Download MendeleyHEPN-AbiV is an RNase in the AbiV antiphage system
Zhu, X., Morency, C., Picard, M.-E., Mosterd, C., McAlister, J.A., Perrault-Jolicoeur, A., Geddes-McAlister, J., Shi, R., Moineau, S.To be published.
9BJ7 | pdb_00009bj7
Crystal structure of the N-terminal truncated AbiV (residues 24-201)
- PDB DOI: https://doi.org/10.2210/pdb9BJ7/pdb
- Classification: RNA BINDING PROTEIN
- Organism(s): Lactococcus cremoris
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-04-25 Released: 2025-08-13
- Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.64 Å
- R-Value Free: 0.268 (Depositor), 0.268 (DCC)
- R-Value Work: 0.225 (Depositor), 0.229 (DCC)
- R-Value Observed: 0.228 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| AbiV family abortive infection protein | 184 | Lactococcus cremoris | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A2RJ64 (Lactococcus lactis subsp. cremoris (strain MG1363)) Explore A2RJ64 Go to UniProtKB: A2RJ64 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A2RJ64 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | AA [auth E] BA [auth G] CA [auth G] DA [auth Q] EA [auth R] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.64 Å
- R-Value Free: 0.268 (Depositor), 0.268 (DCC)
- R-Value Work: 0.225 (Depositor), 0.229 (DCC)
- R-Value Observed: 0.228 (Depositor)
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.444 | α = 90.96 |
| b = 106.901 | β = 89.95 |
| c = 146.228 | γ = 95.02 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALA | data scaling |
| XDS | data reduction |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-08-13 Deposition Author(s): Zhu, X., Moineau, S., Shi, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | 436202 |
Revision History (Full details and data files)
- Version 1.0: 2025-08-13
Type: Initial release
