Transient interactions modulate affinity of NF-kappaB transcription factors for DNA
Biswas, T., Shandy, S., Tsodikov, O.V., Huang, D., Li, T., Wang, Y., Wang, V., Ghosh, G.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transcription factor p65 | 287 | Mus musculus | Mutation(s): 0  Gene Names: Rela, Nfkb3 | ||
UniProt | |||||
Find proteins for Q04207 (Mus musculus) Explore Q04207  Go to UniProtKB:  Q04207 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q04207 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*AP*CP*TP*GP*GP*GP*AP*AP*GP*TP*TP*CP*CP*AP*GP*TP*GP*AP*T)-3') | 19 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*AP*TP*CP*AP*CP*TP*GP*GP*AP*AP*CP*TP*TP*CP*CP*CP*AP*GP*T)-3') | 19 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BOG (Subject of Investigation/LOI) Query on BOG | J [auth C] | octyl beta-D-glucopyranoside C14 H28 O6 HEGSGKPQLMEBJL-RKQHYHRCSA-N | |||
SO4 (Subject of Investigation/LOI) Query on SO4 | E [auth A], F [auth B], G [auth B], H [auth B], I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
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a = 119.263 | α = 90 |
b = 133.084 | β = 90 |
c = 45.67 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data scaling |
HKL-2000 | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01 GM085490-11 |