9BCY | pdb_00009bcy

Crystal structure of Mayaro virus capsid C-terminal domain

PDB DOI: https://doi.org/10.2210/pdb9BCY/pdb

Classification: VIRAL PROTEIN
Organism(s): Mayaro virus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-04-10 Released: 2025-03-19
Deposition Author(s): Bezerra, E.H.S., Scorsato, V., Tonoli, C.C., Benedetti, C.E., Marques, R.E.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.18 Å
R-Value Free:
0.181 (Depositor), 0.190 (DCC)
R-Value Work:
0.165 (Depositor), 0.173 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Mayaro virus capsid C-terminal domain

Bezerra, E.H.S., Scorsato, V., Tonoli, C.C., Benedetti, C.E., Marques, R.E.

To be published.

Macromolecule Content

Total Structure Weight: 34.93 kDa
Atom Count: 2,944
Modeled Residue Count: 298
Deposited Residue Count: 314
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Structural polyprotein	A [auth AAA], B [auth BBB]	157	Mayaro virus	Mutation(s): 0
UniProt
Find proteins for A0A0A7RQX5 (Mayaro virus) Explore A0A0A7RQX5 Go to UniProtKB: A0A0A7RQX5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0A7RQX5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO (Subject of Investigation/LOI) Query on EDO Download Ideal Coordinates CCD File SDF format, chain J [auth BBB] SDF format, chain I [auth BBB] SDF format, chain H [auth AAA] SDF format, chain G [auth AAA] SDF format, chain F [auth AAA] SDF format, chain E [auth AAA] SDF format, chain D [auth AAA] SDF format, chain C [auth AAA] MOL2 format, chain J [auth BBB] MOL2 format, chain I [auth BBB] MOL2 format, chain H [auth AAA] MOL2 format, chain G [auth AAA] MOL2 format, chain F [auth AAA] MOL2 format, chain E [auth AAA] MOL2 format, chain D [auth AAA] MOL2 format, chain C [auth AAA] mmCIF format, chain J [auth BBB] mmCIF format, chain I [auth BBB] mmCIF format, chain H [auth AAA] mmCIF format, chain G [auth AAA] mmCIF format, chain F [auth AAA] mmCIF format, chain E [auth AAA] mmCIF format, chain D [auth AAA] mmCIF format, chain C [auth AAA]	C [auth AAA] D [auth AAA] E [auth AAA] F [auth AAA] G [auth AAA] C [auth AAA], D [auth AAA], E [auth AAA], F [auth AAA], G [auth AAA], H [auth AAA], I [auth BBB], J [auth BBB]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain C [auth AAA] Focus chain D [auth AAA] Focus chain E [auth AAA] Focus chain F [auth AAA] Focus chain G [auth AAA] Focus chain H [auth AAA] Focus chain I [auth BBB] Focus chain J [auth BBB] Interactions & Density Focus chain C [auth AAA] Focus chain D [auth AAA] Focus chain E [auth AAA] Focus chain F [auth AAA] Focus chain G [auth AAA] Focus chain H [auth AAA] Focus chain I [auth BBB] Focus chain J [auth BBB]