9B4Y | pdb_00009b4y

Cryo-EM structure of importin alpha-1/beta bound to TDP-43

• PDB DOI: https://doi.org/10.2210/pdb9B4Y/pdb
• EM Map EMD-44191: EMDB EMDataResource

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-03-21 Released: 2025-03-26 
• Deposition Author(s): Ko, Y., Cingolani, G.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.74 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure of importin alpha-1/beta bound to TDP-43

Ko, Y., Cingolani, G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 102.62 kDa 
• Atom Count: 7,178 
• Modeled Residue Count: 919 
• Deposited Residue Count: 919 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Importin subunit beta-1	A	876	Homo sapiens	Mutation(s): 0  Gene Names: KPNB1, NTF97
UniProt & NIH Common Fund Data Resources
Find proteins for Q14974 (Homo sapiens) Explore Q14974  Go to UniProtKB:  Q14974
PHAROS:  Q14974 GTEx:  ENSG00000108424

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Importin subunit alpha-1	B	43	Homo sapiens	Mutation(s): 0  Gene Names: KPNA2, RCH1, SRP1
UniProt & NIH Common Fund Data Resources
Find proteins for P52292 (Homo sapiens) Explore P52292  Go to UniProtKB:  P52292
PHAROS:  P52292 GTEx:  ENSG00000182481

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.74 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-03-26 
Deposition Author(s): Ko, Y., Cingolani, G.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History  

• Version 1.0: 2025-03-26
  Type: Initial release
  
• Version 1.1: 2025-05-28
  Changes: Data collection