9A82 | pdb_00009a82

Tomaymycin NRPS system: complex of the substrate-loaded peptidyl-carrier-protein domain from the A module (APCP-load) with the adaptor (BN91) and condensation (BC) domains of the B module

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.


Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 4 
  • Representative Model: 1 

This is version 1.0 of the entry. See complete history


Literature

The specificity of intermodular recognition in a prototypical nonribosomal peptide synthetase depends on an adaptor domain

Karanth, M.N.Kirkpatrick, J.P.Krausze, J.Schmelz, S.Scrima, A.Carlomagno, T.

(2024) Sci Adv 10

  • DOI: https://doi.org/10.1126/sciadv.adm9404
  • Primary Citation of Related Structures:  
    8QNF, 8QPY, 8QRX, 8QSX, 8RZ6, 9A82, 9A83

  • PubMed Abstract: 

    In the quest for new bioactive substances, nonribosomal peptide synthetases (NRPS) provide biodiversity by synthesizing nonproteinaceous peptides with high cellular activity. NRPS machinery consists of multiple modules, each catalyzing a unique series of chemical reactions. Incomplete understanding of the biophysical principles orchestrating these reaction arrays limits the exploitation of NRPSs in synthetic biology. Here, we use nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry to solve the conundrum of how intermodular recognition is coupled with loaded carrier protein specificity in the tomaymycin NRPS. We discover an adaptor domain that directly recruits the loaded carrier protein from the initiation module to the elongation module and reveal its mechanism of action. The adaptor domain of the type found here has specificity rules that could potentially be exploited in the design of engineered NRPS machinery.


  • Organizational Affiliation
    • Laboratory of Integrative Structural Biology, Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham B15 2TT, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Adaptor (BN91) and condensation (BC) domains of Tomaymycin B module 508N/AMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Substrate-loaded peptidyl-carrier-protein (APCP) domain of the Tomaymycin A module75N/AMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 4 
  • Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-21
    Type: Initial release