9A49 | pdb_00009a49

Structure of the alpha7nAChR Transmembrane and Intracellular Domains in Complex with the PICK1 PDZ Domain

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.


Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 
  • Representative Model: 

This is version 1.0 of the entry. See complete history

Literature

Unconventional PDZ Recognition Revealed in alpha7 nAChR-PICK1 Complexes

Bondarenko, VChen, QTillman, T.S.Xu, Y.Tang, P.

(2024) Acs Chem Neurosci 

  • DOI: https://doi.org/10.1021/acschemneuro.4c00138
  • Primary Citation Related Structures: 
    9A49

  • PubMed Abstract: 

    PDZ domains are modular domains that conventionally bind to C terminal or internal motifs of target proteins to control cellular functions through the regulation of protein complex assemblies. Almost all reported structures of PDZ-target protein complexes rely on fragments or peptides as target proteins. No intact target protein complexed with PDZ was structurally characterized. In this study, we used NMR spectroscopy and other biochemistry and biophysics tools to uncover insights into structural coupling between the PDZ domain of protein interacting with C-kinase 1 (PICK1) and α7 nicotinic acetylcholine receptors (α7 nAChR). Notably, the intracellular domains of both α7 nAChR and PICK1 PDZ exhibit a high degree of plasticity in their coupling. Specifically, the MA helix of α7 nAChR interacts with residues lining the canonical binding site of the PICK1 PDZ, while flexible loops also engage in protein-protein interactions. Both hydrophobic and electrostatic interactions mediate the coupling. Overall, the resulting structure of the α7 nAChR-PICK1 complex reveals an unconventional PDZ binding mode, significantly expanding the repertoire of functionally important PDZ interactions.


  • Organizational Affiliation
    • Depatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.

Macromolecule Content 

  • Total Structure Weight: 178.85 kDa 
  • Atom Count: 10,733 
  • Modeled Residue Count: 1,406 
  • Deposited Residue Count: 1,406 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:
|   3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CHRNA7-FAM7A fusion protein
A, B, C, D, E
264Homo sapiensMutation(s): 3 
UniProt & NIH Common Fund Data Resources
Find proteins for P36544 (Homo sapiens)
Explore P36544 
Go to UniProtKB:  P36544
PHAROS:  P36544
GTEx:  ENSG00000175344 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36544
Sequence Annotations
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Reference Sequence
Find similar proteins by:
|   3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
PRKCA-binding protein86Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NRD5 (Homo sapiens)
Explore Q9NRD5 
Go to UniProtKB:  Q9NRD5
PHAROS:  Q9NRD5
GTEx:  ENSG00000100151 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NRD5
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 
  • Representative Model: 

Structure Validation

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View Summary Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-10
    Type: Initial release