9A3W | pdb_00009a3w

Structure of the phage immune evasion protein Gad1 bound to the Gabija GajAB complex

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.

PDB DOI: https://doi.org/10.2210/pdb9A3W/pdb

Organism(s): Bacillus cereus (strain VD045), Bacillus phage phi3T
Mutation(s): No

Deposited: 2023-10-26 Released: 2024-01-05
Deposition Author(s): Antine, S.P., Johnson, A.G., Mooney, S.E., Mayer, M.L., Kranzusch, P.J.

Integrative Structure Snapshot

Multi-Scale: No
Multi-State: No
Ordered-State: No
Deposited Models: 1
Representative Model: 1

wwPDB ValidationFull ReportSummary Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis of Gabija anti-phage defence and viral immune evasion

Antine, S.P., Johnson, A.G., Mooney, S.E., Leavitt, A., Mayer, M.L., Yirmyia, E., Amitai, G., Sorek, R., Kranzusch, P.J.

(2023) Nature

DOI: https://doi.org/10.1038/s41586-023-06855-2

Macromolecule Content

Total Structure Weight: 920.81 kDa
Atom Count: 55,300
Modeled Residue Count: 6,836
Deposited Residue Count: 6,836
Unique protein chains: 3

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija protein GajA	A, B, C, D	626	Bacillus cereus (strain VD045)	Mutation(s): 0 Gene Names: gajA EC: 3.1
UniProt
Find proteins for J8H9C1 (Bacillus cereus (strain VD045)) Explore J8H9C1 Go to UniProtKB: J8H9C1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	J8H9C1
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija protein GajB	E, F, G, H	493	Bacillus cereus (strain VD045)	Mutation(s): 0 Gene Names: gajB
UniProt
Find proteins for J8HQ06 (Bacillus cereus (strain VD045)) Explore J8HQ06 Go to UniProtKB: J8HQ06
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	J8HQ06
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija anti-defense 1	I, J, K, L, M I, J, K, L, M, N, O, P	295	Bacillus phage phi3T	Mutation(s): 0 Gene Names: gad1
UniProt
Find proteins for A0A1P8CWZ3 (Bacillus phage phi3T) Explore A0A1P8CWZ3 Go to UniProtKB: A0A1P8CWZ3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1P8CWZ3
Sequence Annotations Expand
Reference Sequence