9A1G | pdb_00009a1g

Structures of multiple states of the hGBP1 resolved by FRET, SAXS, and EPR

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.


Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: Yes 
  • Ordered-State: No 
  • Deposited Models: 206 
  • Representative Model: 

This is version 1.0 of the entry. See complete history

Literature

Integrative dynamic structural biology unveils conformers essential for the oligomerization of a large GTPase

Thomas-Otavio PeulenCarola S. HengstenbergRalf BiehlMykola DimuraCharlotte LorenzAlessandro ValeriJulian FolzChristian A. HankeSemra InceTobias VoepelBela FaragoHolger GohlkeJohann P. KlareAndreas M. StadlerClaus A. M. SeidelChristian Herrmann

(2023) Elife 12: e79565

  • DOI: https://doi.org/10.7554/eLife.79565
  • Primary Citation Related Structures: 
    9A1G

  • PubMed Abstract: 

    Guanylate binding proteins (GBPs) are soluble dynamin-like proteins that undergo a conformational transition for GTP-controlled oligomerization and disrupt membranes of intracellular parasites to exert their function as part of the innate immune system of mammalian cells. We apply neutron spin echo, X-ray scattering, fluorescence, and EPR spectroscopy as techniques for integrative dynamic structural biology to study the structural basis and mechanism of conformational transitions in the human GBP1 (hGBP1). We mapped hGBP1's essential dynamics from nanoseconds to milliseconds by motional spectra of sub-domains. We find a GTP-independent flexibility of the C-terminal effector domain in the µs-regime and resolve structures of two distinct conformers essential for an opening of hGBP1 like a pocket knife and for oligomerization. Our results on hGBP1's conformational heterogeneity and dynamics (intrinsic flexibility) deepen our molecular understanding relevant for its reversible oligomerization, GTP-triggered association of the GTPase-domains and assembly-dependent GTP-hydrolysis.


  • Organizational Affiliation
    • Chair for Molecular Physical Chemistry, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.

Macromolecule Content 

  • Total Structure Weight: 77.41 kDa 
  • Atom Count: 4,690 
  • Modeled Residue Count: 583 
  • Deposited Residue Count: 583 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:
|   3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
hGBP1 wildtype583N/AMutation(s): 3 
EC: 3.6.1 (UniProt), 3.6.5 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P32455 (Homo sapiens)
Explore P32455 
Go to UniProtKB:  P32455
PHAROS:  P32455
GTEx:  ENSG00000117228 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32455
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: Yes 
  • Ordered-State: No 
  • Deposited Models: 206 
  • Representative Model: 

Structure Validation

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View Summary Validation Report



Entry History