9A0K | pdb_00009a0k

A structural model of the endogenoushuman SWI/SNF (BAF) complex bound to the nucleosome informs disease mechanisms

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.

PDB DOI: https://doi.org/10.2210/pdb9A0K/pdb
NAKB: 9A0K

Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2020-08-24 Released: 2020-10-16
Deposition Author(s): Mashtalir N, Suzuki H, Farrell DP, Sankar A, Luo J, Filipovski M, D'Avino AR, St.Pierre R, Valencia AM, Onikubo T, Roeder RG, Han Y, He Y, Ranish JA, DiMaio F, Walz T, Kadoch C

Integrative Structure Snapshot

Multi-Scale: No
Multi-State: No
Ordered-State: No
Deposited Models: 1
Representative Model: 1

wwPDB ValidationFull ReportSummary Report

This is version 1.0 of the entry. See complete history.

Literature

A Structural Model of the Endogenous Human BAF Complex Informs Disease Mechanisms

Mashtalir N, Suzuki H, Farrell DP, Sankar A, Luo J, Filipovski M, D'Avino AR, St.Pierre R, Valencia AM, Onikubo T, Roeder RG, Han Y, He Y, Ranish JA, DiMaio F, Walz T, Kadoch C

(2020) Cell

DOI: https://doi.org/10.1016/j.cell.2020.09.051

Macromolecule Content

Total Structure Weight: 1,379.16 kDa
Atom Count: 38,894
Modeled Residue Count: 10,139
Deposited Residue Count: 10,139
Unique protein chains: 14
Unique nucleic acid chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ACTB	B	375	Homo sapiens	Mutation(s): 0 Gene Names: ACTB EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for P60709 (Homo sapiens) Explore P60709 Go to UniProtKB: P60709
PHAROS: P60709 GTEx: ENSG00000075624
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P60709
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ACTL6A	6	429	Homo sapiens	Mutation(s): 0 Gene Names: ACTL6A
UniProt & NIH Common Fund Data Resources
Find proteins for O96019 (Homo sapiens) Explore O96019 Go to UniProtKB: O96019
PHAROS: O96019 GTEx: ENSG00000136518
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O96019
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
ARID1A	A	2,285	Homo sapiens	Mutation(s): 0 Gene Names: ARID1A
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Find proteins for O14497 (Homo sapiens) Explore O14497 Go to UniProtKB: O14497
PHAROS: O14497 GTEx: ENSG00000117713
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O14497
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
DPF2	P	391	Homo sapiens	Mutation(s): 0 Gene Names: DPF2
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Find proteins for Q92785 (Homo sapiens) Explore Q92785 Go to UniProtKB: Q92785
PHAROS: Q92785 GTEx: ENSG00000133884
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q92785
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
SMARCA4	4	1,647	Homo sapiens	Mutation(s): 0 Gene Names: SMARCA4 EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for P51532 (Homo sapiens) Explore P51532 Go to UniProtKB: P51532
PHAROS: P51532 GTEx: ENSG00000127616
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P51532
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
SMARCB1	b	385	Homo sapiens	Mutation(s): 0 Gene Names: SMARCB1
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Find proteins for Q12824 (Homo sapiens) Explore Q12824 Go to UniProtKB: Q12824
PHAROS: Q12824 GTEx: ENSG00000099956
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q12824
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
SMARCC1	1	1,105	Homo sapiens	Mutation(s): 0 Gene Names: SMARCC1
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Find proteins for Q92922 (Homo sapiens) Explore Q92922 Go to UniProtKB: Q92922
PHAROS: Q92922 GTEx: ENSG00000173473
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q92922
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Reference Sequence

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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
SMARCC2	2	1,214	Homo sapiens	Mutation(s): 0 Gene Names: SMARCC2
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Find proteins for Q8TAQ2 (Homo sapiens) Explore Q8TAQ2 Go to UniProtKB: Q8TAQ2
PHAROS: Q8TAQ2 GTEx: ENSG00000139613
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8TAQ2
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Reference Sequence

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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
SMARCD1	D	515	Homo sapiens	Mutation(s): 0 Gene Names: SMARCD1
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Find proteins for Q96GM5 (Homo sapiens) Explore Q96GM5 Go to UniProtKB: Q96GM5
PHAROS: Q96GM5 GTEx: ENSG00000066117
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q96GM5
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Reference Sequence

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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
SMARCE1	E	411	Homo sapiens	Mutation(s): 0 Gene Names: SMARCE1
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Find proteins for Q969G3 (Homo sapiens) Explore Q969G3 Go to UniProtKB: Q969G3
PHAROS: Q969G3 GTEx: ENSG00000073584
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q969G3
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Reference Sequence

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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
H2A	V, v	130	Homo sapiens	Mutation(s): 0 Gene Names: H2AC11, H2AC13, H2AC15, H2AC16, H2AC17
UniProt & NIH Common Fund Data Resources
Find proteins for P0C0S8 (Homo sapiens) Explore P0C0S8 Go to UniProtKB: P0C0S8
PHAROS: P0C0S8 GTEx: ENSG00000196747 ENSG00000196787 ENSG00000278677 ENSG00000276903
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0C0S8
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Reference Sequence

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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
H2B	W, w	126	Homo sapiens	Mutation(s): 0 Gene Names: H2BC4, H2BC6, H2BC7, H2BC8, H2BC10
UniProt & NIH Common Fund Data Resources
Find proteins for P62807 (Homo sapiens) Explore P62807 Go to UniProtKB: P62807
PHAROS: P62807 GTEx: ENSG00000180596 ENSG00000277224 ENSG00000278588 ENSG00000273802 ENSG00000274290
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62807
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Reference Sequence

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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
H3	X, x	136	Homo sapiens	Mutation(s): 0 Gene Names: H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
UniProt & NIH Common Fund Data Resources
Find proteins for P68431 (Homo sapiens) Explore P68431 Go to UniProtKB: P68431
PHAROS: P68431 GTEx: ENSG00000197409 ENSG00000197153 ENSG00000278828 ENSG00000275714 ENSG00000273983 ENSG00000274750 ENSG00000275379 ENSG00000277775
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P68431
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Reference Sequence

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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
H4	Y, y	103	Homo sapiens	Mutation(s): 0 Gene Names: H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12... H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
UniProt & NIH Common Fund Data Resources
Find proteins for P62805 (Homo sapiens) Explore P62805 Go to UniProtKB: P62805
PHAROS: P62805 GTEx: ENSG00000274618 ENSG00000197238 ENSG00000197837 ENSG00000158406 ENSG00000278705 ENSG00000197061 ENSG00000270882 ENSG00000270276 ENSG00000273542 ENSG00000277157 ENSG00000276966 ENSG00000276180 ENSG00000278637 ENSG00000275126
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62805
Sequence Annotations Expand
Reference Sequence