8Z5X | pdb_00008z5x

Cryo-EM structure of the MS ring with the proximal rod and the export apparatus (C1) within the polar flagellar motor


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.64 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: in silico
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wwPDB Validation 3D Report Full Report

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Literature

Molecular basis of high-torque transmission of the Vibrio polar flagellar motor.

Zhang, L.Tan, J.Duan, X.Wang, X.Wang, T.Yuan, K.Homma, M.Kojima, S.Zhou, Y.Zhu, Y.

(2026) Protein Cell 

  • DOI: https://doi.org/10.1093/procel/pwag025
  • Primary Citation Related Structures: 
    8Z5N, 8Z5S, 8Z5U, 8Z5V, 8Z5W, 8Z5X, 8Z5Y, 8Z5Z, 8Z60

  • PubMed Abstract: 

    The bacterial flagellar motor is a protein nanomachine that rotates the flagellum to facilitate bacterial motility. These motors exhibit structural diversity among species, enabling the transmission of varying torques to flagellar filaments to grant bacteria diverse swimming capabilities. Compared to peritrichous flagellar motors, polar flagellar motors are faster machines that transmit higher torque to drive high-speed motility in liquids and empower swimming in viscous environments. However, structural basis of high-torque transmission of the polar flagellar motors is still unclear. Here we present a cryo-electron microscopy structure of the polar flagellar motor in complex with the hook from Vibrio alginolyticus, comprising 295 subunits from 18 proteins. Compared to the peritrichous flagellar rod, this structure reveals an increased number of inter-subunit interactions in the rod of the polar flagellar motor. Nine phospholipid molecules insert into the interface between the export apparatus and the proximal rod. The LP ring contains more electrostatic charges on the inner surface and has fewer physical contacts with the rod, while the HT ring tightly binds to the outer surface of the LP ring. FlrP, a protein of previously unknown function, is identified as a new component of the polar flagellar motor, and extensively participates in the interactions of 15 FliF peptides of the MS ring with the rod. In contrast to that in the peritrichous flagellum, the hook in the polar flagellum has two different conformational states, L- and R-types. These findings provide unprecedented insights into structural adaptations of the bacterial polar flagellar motors for high-torque transmission.


  • Organizational Affiliation
    • School of Public Health, Life Sciences Institute, and Department of Infectious Diseases of the Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, 310058, China.

Macromolecule Content 

  • Total Structure Weight: 5,115.99 kDa 
  • Atom Count: 88,315 
  • Modeled Residue Count: 11,398 
  • Deposited Residue Count: 46,459 
  • Unique protein chains: 10

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliPA [auth 0],
AA [auth AP],
J [auth 9],
VA [auth Ak],
WA [auth Al]
289Vibrio alginolyticusMutation(s): 0 
UniProt
Find proteins for A0A1W6TTE6 (Vibrio alginolyticus)
Explore A0A1W6TTE6 
Go to UniProtKB:  A0A1W6TTE6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1W6TTE6
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar M-ring protein580Vibrio alginolyticusMutation(s): 0 
UniProt
Find proteins for Q75N27 (Vibrio alginolyticus)
Explore Q75N27 
Go to UniProtKB:  Q75N27
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UniProt GroupQ75N27
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliQBA [auth AQ],
CA [auth AR],
G [auth 6],
H [auth 7]
89Vibrio alginolyticusMutation(s): 0 
UniProt
Find proteins for A0A0T7EAU9 (Vibrio diabolicus)
Explore A0A0T7EAU9 
Go to UniProtKB:  A0A0T7EAU9
Entity Groups
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UniProt GroupA0A0T7EAU9
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliRI [auth 8]260Vibrio alginolyticusMutation(s): 0 
UniProt
Find proteins for A0A0H0YFV7 (Vibrio alginolyticus)
Explore A0A0H0YFV7 
Go to UniProtKB:  A0A0H0YFV7
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UniProt GroupA0A0H0YFV7
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar basal body rod protein FlgBDA [auth AS],
EA [auth AT],
FA [auth AU],
GA [auth AV],
HA [auth AW]
131Vibrio alginolyticusMutation(s): 0 
UniProt
Find proteins for A0A0G9LZG6 (Vibrio alginolyticus)
Explore A0A0G9LZG6 
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UniProt GroupA0A0G9LZG6
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar basal-body rod protein FlgC137Vibrio alginolyticusMutation(s): 0 
UniProt
Find proteins for A0A0G9LZH2 (Vibrio alginolyticus)
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UniProt GroupA0A0G9LZH2
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar hook-basal body complex protein FliE103Vibrio alginolyticusMutation(s): 0 
UniProt
Find proteins for A0A2L2K9J6 (Vibrio diabolicus)
Explore A0A2L2K9J6 
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Entity Groups
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UniProt GroupA0A2L2K9J6
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FlhBUA [auth Aj]376Vibrio alginolyticusMutation(s): 0 
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Alanine-modelled FlgB-Dc loopAD [auth Aq],
WC [auth Am],
XC [auth An],
YC [auth Ao],
ZC [auth Ap]
13Vibrio alginolyticusMutation(s): 0 
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
FliE-helix 117Vibrio alginolyticusMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.64 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81925024
National Natural Science Foundation of China (NSFC)ChinaU23A20163
Ministry of Science and Technology (MoST, China)China2017YFA0503900

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-22
    Type: Initial release
  • Version 1.1: 2026-05-13
    Changes: Data collection, Database references