Sialic acid bound form of Tripartite ATP-independent Periplasmic (TRAP) transporter from Fusobacterium nucleatum.
Goyal, P., Ramaswamy, S., Vinothkumar, K.R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
N-acetylneuraminate transporter small subunit | 664 | Fusobacterium nucleatum | Mutation(s): 0  Gene Names: FN1473 Membrane Entity: Yes  | ![]() | |
UniProt | |||||
Find proteins for Q8RDN8 (Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)) Explore Q8RDN8  Go to UniProtKB:  Q8RDN8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8RDN8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
FnTRAP specific nanobody | 128 | Vicugna pacos | Mutation(s): 0  | ![]() | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PTY Query on PTY | F [auth A], G [auth A] | PHOSPHATIDYLETHANOLAMINE C40 H80 N O8 P NJGIRBISCGPRPF-KXQOOQHDSA-N | |||
SLB Query on SLB | H [auth A] | N-acetyl-beta-neuraminic acid C11 H19 N O9 SQVRNKJHWKZAKO-PFQGKNLYSA-N | |||
NA Query on NA | C [auth A], D [auth A], E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.21_5207: |
Funding Organization | Location | Grant Number |
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Other government | IA/E/16/1/502999 | |
Department of Biotechnology (DBT, India) | India | DBT/PR12422/MED/31/287/2014 |