8Y0G | pdb_00008y0g

Human beta-catenin crystal structure

PDB DOI: https://doi.org/10.2210/pdb8Y0G/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-01-22 Released: 2024-03-13
Deposition Author(s): Tim, F.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.287 (Depositor), 0.288 (DCC)
R-Value Work:
0.246 (DCC)
R-Value Observed:
0.238 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8Y0G

This is version 2.0 of the entry. See complete history.

Literature

Crystal protein of human Beta-catenin

Tim, F.

To be published.

Macromolecule Content

Total Structure Weight: 60.19 kDa
Atom Count: 3,771
Modeled Residue Count: 508
Deposited Residue Count: 549
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Catenin beta-1	A	549	Homo sapiens	Mutation(s): 0 Gene Names: CTNNB1, CTNNB, OK/SW-cl.35, PRO2286
UniProt & NIH Common Fund Data Resources
Find proteins for P35222 (Homo sapiens) Explore P35222 Go to UniProtKB: P35222
PHAROS: P35222 GTEx: ENSG00000168036
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P35222
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.287 (Depositor), 0.288 (DCC)
R-Value Work: 0.246 (DCC)
R-Value Observed: 0.238 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.842	α = 90
b = 103.434	β = 90
c = 186.418	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
HKL-2000	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-03-13

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private	China	--

Revision History (Full details and data files)

Version 1.0: 2024-03-13
Type: Initial release
Version 2.0: 2024-05-22
Type: Coordinate replacement
Reason: Atoms with unrealistic or zero occupancies
Changes: Advisory, Atomic model, Data collection, Derived calculations, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.