8Y0G | pdb_00008y0g

Human beta-catenin crystal structure

• PDB DOI: https://doi.org/10.2210/pdb8Y0G/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-01-22 Released: 2024-03-13 
• Deposition Author(s): Tim, F.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.287 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.250 (DCC) 
• R-Value Observed: 
  0.238 (Depositor) 

Starting Model: experimental

Literature

Crystal protein of human Beta-catenin

Tim, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 60.19 kDa 
• Atom Count: 3,771 
• Modelled Residue Count: 508 
• Deposited Residue Count: 549 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Catenin beta-1	A	549	Homo sapiens	Mutation(s): 0  Gene Names: CTNNB1, CTNNB, OK/SW-cl.35, PRO2286
UniProt & NIH Common Fund Data Resources
Find proteins for P35222 (Homo sapiens) Explore P35222  Go to UniProtKB:  P35222
PHAROS:  P35222 GTEx:  ENSG00000168036

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.287 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.250 (DCC) 
• R-Value Observed: 0.238 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.842	α = 90
b = 103.434	β = 90
c = 186.418	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
HKL-2000	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-13 
Deposition Author(s): Tim, F.

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Funding Organization	Location	Grant Number
Other private	China	--

Revision History  

• Version 1.0: 2024-03-13
  Type: Initial release
  
• Version 2.0: 2024-05-22
  Type: Coordinate replacement
  Reason: Atoms with unrealistic or zero occupancies
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Refinement description, Structure summary