8WQD

Local refinement of FEM1B bound with the C-degron of CCC89

• PDB DOI: https://doi.org/10.2210/pdb8WQD/pdb
• EM Map EMD-37740: EMDB EMDataResource

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-10-11 Released: 2024-04-03 
• Deposition Author(s): Chen, X., Zhang, K., Xu, C.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.55 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Local refinement of FEM1B bound with the C-degron of CCC89

Chen, X., Zhang, K., Xu, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 73.58 kDa 
• Atom Count: 5,046 
• Modelled Residue Count: 641 
• Deposited Residue Count: 658 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein fem-1 homolog B	A [auth D]	627	Homo sapiens	Mutation(s): 0  Gene Names: FEM1B, F1AA, KIAA0396
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UK73 (Homo sapiens) Explore Q9UK73  Go to UniProtKB:  Q9UK73
PHAROS:  Q9UK73 GTEx:  ENSG00000169018

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Coiled-coil domain-containing protein 89	B [auth G]	31	Homo sapiens	Mutation(s): 0  Gene Names: CCDC89, BOIP
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N998 (Homo sapiens) Explore Q8N998  Go to UniProtKB:  Q8N998
GTEx:  ENSG00000179071

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.55 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-03 
Deposition Author(s): Chen, X., Zhang, K., Xu, C.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-04-03
  Type: Initial release