8WFQ | pdb_00008wfq

The Crystal Structure of RALDH1 from Biortus.

PDB DOI: https://doi.org/10.2210/pdb8WFQ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-09-20 Released: 2023-11-22
Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Qi, J., Shen, Z.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.50 Å
R-Value Free:
0.254 (Depositor), 0.252 (DCC)
R-Value Work:
0.230 (Depositor), 0.232 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

The Crystal Structure of RALDH1 from Biortus.

Wang, F., Cheng, W., Lv, Z., Qi, J., Shen, Z.

To be published.

Macromolecule Content

Total Structure Weight: 445.02 kDa
Atom Count: 30,920
Modeled Residue Count: 3,950
Deposited Residue Count: 4,016
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aldehyde dehydrogenase 1A1	A, B, C, D, E A, B, C, D, E, F, G, H	502	Homo sapiens	Mutation(s): 0 Gene Names: ALDH1A1 EC: 1.2.1.19 (UniProt), 1.2.1.28 (UniProt), 1.2.1.36 (UniProt), 1.2.1.3 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P00352 (Homo sapiens) Explore P00352 Go to UniProtKB: P00352
PHAROS: P00352 GTEx: ENSG00000165092
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00352
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAI (Subject of Investigation/LOI) Query on NAI Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain L [auth C] SDF format, chain N [auth E] SDF format, chain O [auth F] SDF format, chain P [auth G] SDF format, chain Q [auth H] SDF format, chain M [auth D] SDF format, chain K [auth B] MOL2 format, chain I [auth A] MOL2 format, chain L [auth C] MOL2 format, chain N [auth E] MOL2 format, chain O [auth F] MOL2 format, chain P [auth G] MOL2 format, chain Q [auth H] MOL2 format, chain M [auth D] MOL2 format, chain K [auth B] mmCIF format, chain I [auth A] mmCIF format, chain L [auth C] mmCIF format, chain N [auth E] mmCIF format, chain O [auth F] mmCIF format, chain P [auth G] mmCIF format, chain Q [auth H] mmCIF format, chain M [auth D] mmCIF format, chain K [auth B]	I [auth A] K [auth B] L [auth C] M [auth D] N [auth E] I [auth A], K [auth B], L [auth C], M [auth D], N [auth E], O [auth F], P [auth G], Q [auth H]	1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE C₂₁ H₂₉ N₇ O₁₄ P₂ BOPGDPNILDQYTO-NNYOXOHSSA-N		Interactions Focus chain I [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth E] Focus chain O [auth F] Focus chain P [auth G] Focus chain Q [auth H] Interactions & Density Focus chain I [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth E] Focus chain O [auth F] Focus chain P [auth G] Focus chain Q [auth H]
EDO (Subject of Investigation/LOI) Query on EDO Download:Ideal Coordinates CCD File SDF format, chain J [auth A] MOL2 format, chain J [auth A] mmCIF format, chain J [auth A]	J [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Interactions & Density Focus chain J [auth A]